Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g3115 ATGAGATGTGACAGCTCTGCACCAACTACAAGGCAAAAACCAAAAAGTATCCATTTGGACCATTTTTACAATTACGTGTGGGACGGTCTGGAGGTGCAAAAAGAAAACAACCATTTGTACCGTGAATCTCGGCTCAGCTGTAGATCACCACCCTGCAACCCCGGCTACAGTTGTTGTACATATGAACGTGAGTGTGCGCAGGCAATGCAATCTAATCTAGCTACTGCGCAATCTTTGAATATGCTCACAGCTAGCCTAGCGCATAAGAGCTTGGCACTGACGGCAGAAATAGGATTTGTTGCTACAATTTCTGGAGTTGGAAAGTCGTTAAAAAATGCTTTTACAGTGGTTTTTAATGTTAACATTCCTTTGTGTGGTGTGGTCCAGCGATACCTGTTGTGGCTTTCAGGCACTGGGACTGATTTCCTTTTGGATTTGTCCGTTATATCTGACAGAATGAAAGCTCCCCCAAATGGGTTTTTGGCCAACTCTGGAGAAGGTGAAAGGAAGAATATTAATTCTGAGTTATGGCATGCTTGTGCTGGACCTCTTGTTTCGTTACCTCCAGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGCCACAGTGAACAAGTTGCAGCATCGATGAATAAGGAGACTGATTTCATTCCAAACTACCCTAACCTTCCATCAAAGTTGATCTGCATGCTCCATAATGTCACATTACACGCTGATCCTGAAACTGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATATGAAAAAGACGCTTTATTGGCATCTGATATTGGCCTCAAGCAAAGCAGGCAGCCTTCTGAATTCTTCTGCAAAACTCTAACAGCTAGTGACACCAGCACTCACGGTGGATTTTCTGTGCCTCGTCGTGCAGCTGAGAAGATTTTCCCCCCATTAGACTACTCGATGCAACCCCCTGCTCAGGAGCTAGTGGCTAGAGATTTGCATGATAATTCATGGACATTCAGACATATTTACCGCGGCCAACCAAAAAGACACCTTCTGACCACTGGTTGGAGTGTTTTTGTTAGCACAAAACGACTCTTTGCCGGAGACTCAGTGCTCTTTATAAGAGATGAAAAGTCGCAGCTTCTCTTAGGCATAAGGCGTGCTAACAGGCAGCAGCCAGCTCTCTCTTCGTCAGTCATATCAAGTGATAGCATGCACATAGGAATTCTTGCTTCTGCTGCTCATGCTGCTGCAAATAACAGTCCTTTTACTATATTTTACAATCCTAGGGCCAGTCCTTCTGAATTTGTGATTCCTTTGGCCAAGTATAATAAAGCAATGTATACCCAAGTTTCACTTGGGATGCGATTTAGGATGATGTTTGAAACTGAGGAGTCGGGAGTCCGCAGATATATGGGTACAATCACTGGTATCAGTGACATGGATTCTGTACGTTGGAAAAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCGGCAGCTGGTGAACGACCAAACCGAGTTTCAATATGGGAAGTTGAGCCTGTTGTGACTCCCTTTTACATATGTCCACCTCCATTTTTCAGACCCAAATTCCCTAAACAACCAGGGATGCCAGATGACGAATCTGATATTGAAAATGCTTTTAAGAGAGCCATGCCATGGTTTGGTGATGACTTTGGCATGAAAGATACGTCAAGCTCAATCTTTCCTGGTTTGAGTTTAGTGCAGTGGATGAGCATGCAACATAATAATCAGTTCCCAGCAGCTCAATCTGGAATTTTGCCGTCCATGGTTGCTCCTAGTGCTTTGCATGGAACTCTTACTAATGATGACCCATCTAAATTATTGAGTTTTCAAGCACCAGTAATGTCTTCACCAAATCTCCAATTCAGCAAAGCAAATCAACAGAACCAAGTTGGCCAGTTGCCAACAACTACGTGGTCTCAACAGCAGCAGCTGCAGCAATTATTACAAGTTCCTGCAAGCCAACAGTTACAGCAACAACAGCAGCAGCAGATGCCACCCCAGCAGGAACCACAGCAGCAGCAGCAACAGTCACAGCAGCCGCAACTCCAGTCACAACAGCCACAACGTCAACAGCAGACCTCCCAATCCGCTCTACTGAACAATGGTGTGGCTGCAACTAACCATTTGCCAAATCAGAGTTTGCAACAACCACTTGTTTACTCTCAGCTACAGCAACAGCAATTGCTTGCAGGCAATATACAATCACATCAAACTAGCCAACCATCCAATAAAAACTCATTTCAGACTACATCTATACAGCAAGAAACACAGTTTCAGCCACAAATAGAGCAGCAACCTAGCCTTCTTCCAAGACACCAGCAGCCGACACAATTTCAACAGGCCCCACTACAATTATTGCAACAAAGTCTGTCTCAAAGAGCACAACAACAGCCTCAAGTTCAGCAATTTTCACAGCCAATTTTATCAGAGCAACAACTTCAACTACAGCTGCTACAGAAGCTGCAACAACAGCAACAGCAGCAGCAGCAACCGTTGCTCTCCCCAGCTAGCCCACTATTACCACCTCAGCTGCTACAGCAGCAGCATGTCCATCAGCAAAACCAGCAGTTACCACCATTGCCTTTGTCCAATCAGCAGCAGTTCAATACTAGTGGAGGCAGCTTCCAAACAGAAAAACTTAACAGCAATGGCTTCTCAAGTTTAGGTCTCATGCAGCCCCAGCAGGTTCCTATGACCCAATCCCATAACCAATTCAAACCAACCACGGCAATTAGAGCATATTCTGGACTGACTGATGGAGATGCTCCGTCTTGTTCAACCTCACCTTCCACTAATAATTGCCAAGTTTCAGTGTCAAACCTGCTCAATAAGAACCAACAAGGGGCAGCCACACTGGGGGGAGATTCGGTAGTAGAGCCTGCAACTAACCTGGCTCAGGAGCTACAAAGCAAACCTGATTTGCGGGTCAAACCTGAGTTTCCCAACTCAAAAGGATCGGACCAACTAAAATATAAAGGCACCATTCCTGATCAATTAGAAGCATCTTCTTCTGGAACATCATATTGTCTGGATGCTGGCACCATTCAGCAAACTTTCCCACTCCCTACATGTTTGGATAACGATGTCCAATCACACCCACGAAATAATATCCCGTTCAGTAATAGCATTGATGGATTGGCACCAGATACCTTATTGTCGAGGGGATACGACTCTCAGAAAGATCTTCAGAACTTACTTTCTAACTATGGCGGGGGTGTGCCAAGAGATATTGAGACAGAGTTGTCCACTGCTGCAATCAGCTCTCAGTCATTTGGGGTTCCAAACTTGCCTTTCAAGCCTGGCTGCTCAAATGATGTCAATGTAAATGAAGCTGGAGCCTTGAGTAGTGGATTGTGGGCAAACCACAGTCAACGTATGCGGACATACACAAAGGTTCAAAAGCGTGGATCAGTGGGTAGATGTATCGATGTCACTCGTTACAAAGGATATGACGAACTTAGACATGATCTTGCCCGCATGTTTGGCATTGAAGGGCAGTTAGAAGATCCTCAACGCACTGATTGGAAACTTGTTTATGTGGATCATGAAAATGATATACTTTTAGTTGGCGACGATCCTTGGGAGGAGTTTGTGAGCTGTGTCCAGAGCATAAAGATCCTGTCATCCGCTGAAGTACAGCAGATGAGTTTGGATGGAAATTTGGGTCACATTCAGGCTCCCAATCAAGCTTGCAGTGGAACGGATAGTGGAAATGCATGGAGAGGGCAGTTCCAATCAGCTCCTGAGGTGAGAGCTTCAGGAAATAGTAACTCAGTGAATGTCAAATATACGGCGAATATGGAGACTGACTTGCCACCCAATTGCCGTTTCTGGTGGGAAATGGAGCTCTGTCCATGA 3867 45.02 MRCDSSAPTTRQKPKSIHLDHFYNYVWDGLEVQKENNHLYRESRLSCRSPPCNPGYSCCTYERECAQAMQSNLATAQSLNMLTASLAHKSLALTAEIGFVATISGVGKSLKNAFTVVFNVNIPLCGVVQRYLLWLSGTGTDFLLDLSVISDRMKAPPNGFLANSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLICMLHNVTLHADPETDEVYAQMTLQPVNKYEKDALLASDIGLKQSRQPSEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWFGDDFGMKDTSSSIFPGLSLVQWMSMQHNNQFPAAQSGILPSMVAPSALHGTLTNDDPSKLLSFQAPVMSSPNLQFSKANQQNQVGQLPTTTWSQQQQLQQLLQVPASQQLQQQQQQQMPPQQEPQQQQQQSQQPQLQSQQPQRQQQTSQSALLNNGVAATNHLPNQSLQQPLVYSQLQQQQLLAGNIQSHQTSQPSNKNSFQTTSIQQETQFQPQIEQQPSLLPRHQQPTQFQQAPLQLLQQSLSQRAQQQPQVQQFSQPILSEQQLQLQLLQKLQQQQQQQQQPLLSPASPLLPPQLLQQQHVHQQNQQLPPLPLSNQQQFNTSGGSFQTEKLNSNGFSSLGLMQPQQVPMTQSHNQFKPTTAIRAYSGLTDGDAPSCSTSPSTNNCQVSVSNLLNKNQQGAATLGGDSVVEPATNLAQELQSKPDLRVKPEFPNSKGSDQLKYKGTIPDQLEASSSGTSYCLDAGTIQQTFPLPTCLDNDVQSHPRNNIPFSNSIDGLAPDTLLSRGYDSQKDLQNLLSNYGGGVPRDIETELSTAAISSQSFGVPNLPFKPGCSNDVNVNEAGALSSGLWANHSQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGNLGHIQAPNQACSGTDSGNAWRGQFQSAPEVRASGNSNSVNVKYTANMETDLPPNCRFWWEMELCP 1288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48549666 48583973 - Lag0007084.1 Lac6g3115 612884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g3115 1288 SUPERFAMILY CAD & PB1 domains 1143 1208 - -
Lac6g3115 1288 ProSiteProfiles B3 DNA-binding domain profile. 278 380 IPR003340 GO:0003677(InterPro)
Lac6g3115 1288 MobiDBLite consensus disorder prediction 849 893 - -
Lac6g3115 1288 MobiDBLite consensus disorder prediction 660 699 - -
Lac6g3115 1288 Gene3D - 441 512 - -
Lac6g3115 1288 ProSiteProfiles PB1 domain profile. 1130 1223 IPR053793 -
Lac6g3115 1288 MobiDBLite consensus disorder prediction 736 765 - -
Lac6g3115 1288 Gene3D - 1125 1219 - -
Lac6g3115 1288 Gene3D - 276 379 IPR015300 -
Lac6g3115 1288 FunFam Auxin response factor 1125 1219 - -
Lac6g3115 1288 Coils Coil 811 831 - -
Lac6g3115 1288 SMART B3_2 278 380 IPR003340 GO:0003677(InterPro)
Lac6g3115 1288 SUPERFAMILY DNA-binding pseudobarrel domain 268 407 IPR015300 -
Lac6g3115 1288 CDD B3_DNA 277 378 IPR003340 GO:0003677(InterPro)
Lac6g3115 1288 Pfam B3 DNA binding domain 278 379 IPR003340 GO:0003677(InterPro)
Lac6g3115 1288 MobiDBLite consensus disorder prediction 971 993 - -
Lac6g3115 1288 Pfam AUX/IAA family 1127 1217 IPR033389 -
Lac6g3115 1288 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 171 1221 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac6g3115 1288 FunFam Auxin response factor 276 380 - -
Lac6g3115 1288 FunFam Auxin response factor 441 513 - -
Lac6g3115 1288 Pfam Auxin response factor 404 486 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0162 Lac-Chr2:1232499 Lac6g3115 Lac-Chr6:48549666 4.20E-173 dispersed
Lac5g2249 Lac-Chr5:41182364 Lac6g3115 Lac-Chr6:48549666 6.20E-97 dispersed
Lac6g2214 Lac-Chr6:38709954 Lac6g3115 Lac-Chr6:48549666 2.00E-243 dispersed
Lac6g3115 Lac-Chr6:48549666 Lac9g2590 Lac-Chr9:44434178 3.60E-71 dispersed
Lac6g3115 Lac-Chr6:48549666 Lac1g3550 Lac-Chr1:54711541 4.50E-170 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24098 PF02309 AUX_IAA 2.80E-09 CL0072 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g3115 K14486 - csv:101210917 1700.26