Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g3115 | ATGAGATGTGACAGCTCTGCACCAACTACAAGGCAAAAACCAAAAAGTATCCATTTGGACCATTTTTACAATTACGTGTGGGACGGTCTGGAGGTGCAAAAAGAAAACAACCATTTGTACCGTGAATCTCGGCTCAGCTGTAGATCACCACCCTGCAACCCCGGCTACAGTTGTTGTACATATGAACGTGAGTGTGCGCAGGCAATGCAATCTAATCTAGCTACTGCGCAATCTTTGAATATGCTCACAGCTAGCCTAGCGCATAAGAGCTTGGCACTGACGGCAGAAATAGGATTTGTTGCTACAATTTCTGGAGTTGGAAAGTCGTTAAAAAATGCTTTTACAGTGGTTTTTAATGTTAACATTCCTTTGTGTGGTGTGGTCCAGCGATACCTGTTGTGGCTTTCAGGCACTGGGACTGATTTCCTTTTGGATTTGTCCGTTATATCTGACAGAATGAAAGCTCCCCCAAATGGGTTTTTGGCCAACTCTGGAGAAGGTGAAAGGAAGAATATTAATTCTGAGTTATGGCATGCTTGTGCTGGACCTCTTGTTTCGTTACCTCCAGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGCCACAGTGAACAAGTTGCAGCATCGATGAATAAGGAGACTGATTTCATTCCAAACTACCCTAACCTTCCATCAAAGTTGATCTGCATGCTCCATAATGTCACATTACACGCTGATCCTGAAACTGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATATGAAAAAGACGCTTTATTGGCATCTGATATTGGCCTCAAGCAAAGCAGGCAGCCTTCTGAATTCTTCTGCAAAACTCTAACAGCTAGTGACACCAGCACTCACGGTGGATTTTCTGTGCCTCGTCGTGCAGCTGAGAAGATTTTCCCCCCATTAGACTACTCGATGCAACCCCCTGCTCAGGAGCTAGTGGCTAGAGATTTGCATGATAATTCATGGACATTCAGACATATTTACCGCGGCCAACCAAAAAGACACCTTCTGACCACTGGTTGGAGTGTTTTTGTTAGCACAAAACGACTCTTTGCCGGAGACTCAGTGCTCTTTATAAGAGATGAAAAGTCGCAGCTTCTCTTAGGCATAAGGCGTGCTAACAGGCAGCAGCCAGCTCTCTCTTCGTCAGTCATATCAAGTGATAGCATGCACATAGGAATTCTTGCTTCTGCTGCTCATGCTGCTGCAAATAACAGTCCTTTTACTATATTTTACAATCCTAGGGCCAGTCCTTCTGAATTTGTGATTCCTTTGGCCAAGTATAATAAAGCAATGTATACCCAAGTTTCACTTGGGATGCGATTTAGGATGATGTTTGAAACTGAGGAGTCGGGAGTCCGCAGATATATGGGTACAATCACTGGTATCAGTGACATGGATTCTGTACGTTGGAAAAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCGGCAGCTGGTGAACGACCAAACCGAGTTTCAATATGGGAAGTTGAGCCTGTTGTGACTCCCTTTTACATATGTCCACCTCCATTTTTCAGACCCAAATTCCCTAAACAACCAGGGATGCCAGATGACGAATCTGATATTGAAAATGCTTTTAAGAGAGCCATGCCATGGTTTGGTGATGACTTTGGCATGAAAGATACGTCAAGCTCAATCTTTCCTGGTTTGAGTTTAGTGCAGTGGATGAGCATGCAACATAATAATCAGTTCCCAGCAGCTCAATCTGGAATTTTGCCGTCCATGGTTGCTCCTAGTGCTTTGCATGGAACTCTTACTAATGATGACCCATCTAAATTATTGAGTTTTCAAGCACCAGTAATGTCTTCACCAAATCTCCAATTCAGCAAAGCAAATCAACAGAACCAAGTTGGCCAGTTGCCAACAACTACGTGGTCTCAACAGCAGCAGCTGCAGCAATTATTACAAGTTCCTGCAAGCCAACAGTTACAGCAACAACAGCAGCAGCAGATGCCACCCCAGCAGGAACCACAGCAGCAGCAGCAACAGTCACAGCAGCCGCAACTCCAGTCACAACAGCCACAACGTCAACAGCAGACCTCCCAATCCGCTCTACTGAACAATGGTGTGGCTGCAACTAACCATTTGCCAAATCAGAGTTTGCAACAACCACTTGTTTACTCTCAGCTACAGCAACAGCAATTGCTTGCAGGCAATATACAATCACATCAAACTAGCCAACCATCCAATAAAAACTCATTTCAGACTACATCTATACAGCAAGAAACACAGTTTCAGCCACAAATAGAGCAGCAACCTAGCCTTCTTCCAAGACACCAGCAGCCGACACAATTTCAACAGGCCCCACTACAATTATTGCAACAAAGTCTGTCTCAAAGAGCACAACAACAGCCTCAAGTTCAGCAATTTTCACAGCCAATTTTATCAGAGCAACAACTTCAACTACAGCTGCTACAGAAGCTGCAACAACAGCAACAGCAGCAGCAGCAACCGTTGCTCTCCCCAGCTAGCCCACTATTACCACCTCAGCTGCTACAGCAGCAGCATGTCCATCAGCAAAACCAGCAGTTACCACCATTGCCTTTGTCCAATCAGCAGCAGTTCAATACTAGTGGAGGCAGCTTCCAAACAGAAAAACTTAACAGCAATGGCTTCTCAAGTTTAGGTCTCATGCAGCCCCAGCAGGTTCCTATGACCCAATCCCATAACCAATTCAAACCAACCACGGCAATTAGAGCATATTCTGGACTGACTGATGGAGATGCTCCGTCTTGTTCAACCTCACCTTCCACTAATAATTGCCAAGTTTCAGTGTCAAACCTGCTCAATAAGAACCAACAAGGGGCAGCCACACTGGGGGGAGATTCGGTAGTAGAGCCTGCAACTAACCTGGCTCAGGAGCTACAAAGCAAACCTGATTTGCGGGTCAAACCTGAGTTTCCCAACTCAAAAGGATCGGACCAACTAAAATATAAAGGCACCATTCCTGATCAATTAGAAGCATCTTCTTCTGGAACATCATATTGTCTGGATGCTGGCACCATTCAGCAAACTTTCCCACTCCCTACATGTTTGGATAACGATGTCCAATCACACCCACGAAATAATATCCCGTTCAGTAATAGCATTGATGGATTGGCACCAGATACCTTATTGTCGAGGGGATACGACTCTCAGAAAGATCTTCAGAACTTACTTTCTAACTATGGCGGGGGTGTGCCAAGAGATATTGAGACAGAGTTGTCCACTGCTGCAATCAGCTCTCAGTCATTTGGGGTTCCAAACTTGCCTTTCAAGCCTGGCTGCTCAAATGATGTCAATGTAAATGAAGCTGGAGCCTTGAGTAGTGGATTGTGGGCAAACCACAGTCAACGTATGCGGACATACACAAAGGTTCAAAAGCGTGGATCAGTGGGTAGATGTATCGATGTCACTCGTTACAAAGGATATGACGAACTTAGACATGATCTTGCCCGCATGTTTGGCATTGAAGGGCAGTTAGAAGATCCTCAACGCACTGATTGGAAACTTGTTTATGTGGATCATGAAAATGATATACTTTTAGTTGGCGACGATCCTTGGGAGGAGTTTGTGAGCTGTGTCCAGAGCATAAAGATCCTGTCATCCGCTGAAGTACAGCAGATGAGTTTGGATGGAAATTTGGGTCACATTCAGGCTCCCAATCAAGCTTGCAGTGGAACGGATAGTGGAAATGCATGGAGAGGGCAGTTCCAATCAGCTCCTGAGGTGAGAGCTTCAGGAAATAGTAACTCAGTGAATGTCAAATATACGGCGAATATGGAGACTGACTTGCCACCCAATTGCCGTTTCTGGTGGGAAATGGAGCTCTGTCCATGA | 3867 | 45.02 | MRCDSSAPTTRQKPKSIHLDHFYNYVWDGLEVQKENNHLYRESRLSCRSPPCNPGYSCCTYERECAQAMQSNLATAQSLNMLTASLAHKSLALTAEIGFVATISGVGKSLKNAFTVVFNVNIPLCGVVQRYLLWLSGTGTDFLLDLSVISDRMKAPPNGFLANSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLICMLHNVTLHADPETDEVYAQMTLQPVNKYEKDALLASDIGLKQSRQPSEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWFGDDFGMKDTSSSIFPGLSLVQWMSMQHNNQFPAAQSGILPSMVAPSALHGTLTNDDPSKLLSFQAPVMSSPNLQFSKANQQNQVGQLPTTTWSQQQQLQQLLQVPASQQLQQQQQQQMPPQQEPQQQQQQSQQPQLQSQQPQRQQQTSQSALLNNGVAATNHLPNQSLQQPLVYSQLQQQQLLAGNIQSHQTSQPSNKNSFQTTSIQQETQFQPQIEQQPSLLPRHQQPTQFQQAPLQLLQQSLSQRAQQQPQVQQFSQPILSEQQLQLQLLQKLQQQQQQQQQPLLSPASPLLPPQLLQQQHVHQQNQQLPPLPLSNQQQFNTSGGSFQTEKLNSNGFSSLGLMQPQQVPMTQSHNQFKPTTAIRAYSGLTDGDAPSCSTSPSTNNCQVSVSNLLNKNQQGAATLGGDSVVEPATNLAQELQSKPDLRVKPEFPNSKGSDQLKYKGTIPDQLEASSSGTSYCLDAGTIQQTFPLPTCLDNDVQSHPRNNIPFSNSIDGLAPDTLLSRGYDSQKDLQNLLSNYGGGVPRDIETELSTAAISSQSFGVPNLPFKPGCSNDVNVNEAGALSSGLWANHSQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGNLGHIQAPNQACSGTDSGNAWRGQFQSAPEVRASGNSNSVNVKYTANMETDLPPNCRFWWEMELCP | 1288 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 48549666 | 48583973 | - | Lag0007084.1 | Lac6g3115 | 612884 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g3115 | 1288 | SUPERFAMILY | CAD & PB1 domains | 1143 | 1208 | - | - | |
Lac6g3115 | 1288 | ProSiteProfiles | B3 DNA-binding domain profile. | 278 | 380 | IPR003340 | GO:0003677(InterPro) | |
Lac6g3115 | 1288 | MobiDBLite | consensus disorder prediction | 849 | 893 | - | - | |
Lac6g3115 | 1288 | MobiDBLite | consensus disorder prediction | 660 | 699 | - | - | |
Lac6g3115 | 1288 | Gene3D | - | 441 | 512 | - | - | |
Lac6g3115 | 1288 | ProSiteProfiles | PB1 domain profile. | 1130 | 1223 | IPR053793 | - | |
Lac6g3115 | 1288 | MobiDBLite | consensus disorder prediction | 736 | 765 | - | - | |
Lac6g3115 | 1288 | Gene3D | - | 1125 | 1219 | - | - | |
Lac6g3115 | 1288 | Gene3D | - | 276 | 379 | IPR015300 | - | |
Lac6g3115 | 1288 | FunFam | Auxin response factor | 1125 | 1219 | - | - | |
Lac6g3115 | 1288 | Coils | Coil | 811 | 831 | - | - | |
Lac6g3115 | 1288 | SMART | B3_2 | 278 | 380 | IPR003340 | GO:0003677(InterPro) | |
Lac6g3115 | 1288 | SUPERFAMILY | DNA-binding pseudobarrel domain | 268 | 407 | IPR015300 | - | |
Lac6g3115 | 1288 | CDD | B3_DNA | 277 | 378 | IPR003340 | GO:0003677(InterPro) | |
Lac6g3115 | 1288 | Pfam | B3 DNA binding domain | 278 | 379 | IPR003340 | GO:0003677(InterPro) | |
Lac6g3115 | 1288 | MobiDBLite | consensus disorder prediction | 971 | 993 | - | - | |
Lac6g3115 | 1288 | Pfam | AUX/IAA family | 1127 | 1217 | IPR033389 | - | |
Lac6g3115 | 1288 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 171 | 1221 | IPR044835 | GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Lac6g3115 | 1288 | FunFam | Auxin response factor | 276 | 380 | - | - | |
Lac6g3115 | 1288 | FunFam | Auxin response factor | 441 | 513 | - | - | |
Lac6g3115 | 1288 | Pfam | Auxin response factor | 404 | 486 | IPR010525 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac2g0162 | Lac-Chr2:1232499 | Lac6g3115 | Lac-Chr6:48549666 | 4.20E-173 | dispersed | |
Lac5g2249 | Lac-Chr5:41182364 | Lac6g3115 | Lac-Chr6:48549666 | 6.20E-97 | dispersed | |
Lac6g2214 | Lac-Chr6:38709954 | Lac6g3115 | Lac-Chr6:48549666 | 2.00E-243 | dispersed | |
Lac6g3115 | Lac-Chr6:48549666 | Lac9g2590 | Lac-Chr9:44434178 | 3.60E-71 | dispersed | |
Lac6g3115 | Lac-Chr6:48549666 | Lac1g3550 | Lac-Chr1:54711541 | 4.50E-170 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24098 | PF02309 | AUX_IAA | 2.80E-09 | CL0072 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac6g3115 | K14486 | - | csv:101210917 | 1700.26 |