Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0011 ATGGATAAAGTCGAGTTGAGCGGTGTGGACGACGACTCTATGGAGATGAACTTCGACTTGGATGCAGATGATAGGAGAAAGAGGAAGAAAACCAAGAAAGAGGCAGTGGACGTAGAGACGAAAGGTATTCACCACGTAGAGGAAGATGGATCGCACAGGCTTATCCCGAAAACGGTGCTTAGTGTTCTTCTTGTTGAAGCTGATGATTCCACTCGCCGGATCATCGCTGCGCTCCTTCGCAAATGCAGTTACAGAGTTTCTGCTGTTCCTGATGGACTGAAGGCATGGGAAACTTTGAAGGGAAGACCGCATAATGTTGATCTCATACTTACTGAAGTGGATTTGCCATCAATATCTGGTTATGCACTACTAACGTTAGTCATGGAGCACGACGTTTGCAAAAATATTCCTGTTATAATGATGTCATCTTGCGACACAGTTAGCATGGTCTTGAAGTGTATGTTAAAAGGTGCGGCTGATTTTCTTATTAAGCCAATTAGAAAAAATGAGCTCAAGAACCTTTGGCAGCATTTTTGGAGAAGACACACAAAGATTAGTGGGAAATTTCCCATGAATTTAACTGTAGGACAGCGTGAAGTTGAGGCCACTTCTGATAATGATGAAGCTAGCAATTATTCAAGTGACTGTGTGGCTTCTAGAAAGAAAATTAAGGAATGCAGTGAGAAGGGAAGTGATGCCCAAAGCTCTTGTTCAACACCTTACTTGGAAGCTGAGAGTAGATGCATGCCAAATATGCAGGGTCTTTCACCACTGAAGGATGGGACTGCTCCAAACTTAAACATGAATAATAAGAAACATGGATTTAGTGCTTGTATGGACAAGCAGTCTGATATACTTAAAAGCAACATCAGAGAAAAGTCAGATAATGTGGCCAAAAGCGAAGCTAGCAATTCAGTGCCTTCAAGAATGAAAGAAGATTGTGCTTTTGCAGAAATAAGGAGCGAGAATGTAGTTGTAAGGCCTGACTTCTACAGGGTCGTTGCTGATGGTGCTTGTAAGATGAATAGCCACGACAATAAGGGCACCGAACCTTCCAGTGGAGTCATTGACTTAATAGGAAACTTTGACAATAATCTGAAACGTATCAATAGGGTCTGCAAGTTTGATGACCATAAAAAATGCATCAATAAATTATCCAGCTCCAATGATGTCAGCACAATCAAGTTAGATTTTTCTCCTCAGTTGGAACTTTCTTTAAGAAGAATTTGCCCGGATAAACCAAAAGGCCAGTGGAATGAAAATGTGCATGCACTGAACCACTCCAATGCTTCAGCCTTTTCATCGTACAATAGCTGTAAGATGATGAAACCCCCTTCTCTCACACAACCCAATGCTCCTACTAAATCAGACACAAGTGCAAGTGAATCTCCTGGACCATTGCAAAGTCTACTGTCAGGAAATTCGGGTTGTACTTATCAAGAGTATGGGGTTCCAACAAGGAACAGTCGAAACAATATGAGCCCAAATATTGCTGGTGGGTTTTACCAGGCTGAACATCAAATTCTGCAAACACATCTTGGTCTTCTTCCGGCTCCAGATTTGGTATTTGATAAGACTCCCGCTGATCATGTTTTTCATTCCATGTTCTACATGCCCTCAGTTTTGCGTCGAAGGCCTAATACCAGATCAACATGTCAACAACAGCAGTTTCCCATTTCCATCGATGCCACATTCCATAAATGTCATGATATTTCCAATCCGGGAAAAGTTAATCATCAATGTGTAGAAAACACACATAATACTATTGAACGGGCGGCAGAGGAGTTGAAACATGACTCTCCTAGTGCTACACACAGTGCCTGTAGTAGCTTATGCAATGTAACAGATCATATTAATAGCAATACGTATGGGAGCATTTGCAGCCAAACAGAGGGCAACACCTCGTCTACTGTGGTGGGTGATAAGACTGCAGCCTCTGAAAATATGAATTCTACCAATGTCTCTACGAATGAAGGATATAAAGGACCAGATTCTCCTCGTTCCAGGCATAGAGAAGCAGCTCTGGAGAAGTTCAGGTTGAAACGGAAAGATCGTTGTTATGAGAAAAAGGTCAGATATCAAAGCCGGAAAAGATTGGCCGAGCAGCGACCACGAGTTAAAGGACAATTTGTACGTCAACGGCCTAGTGACCCACCAGCATCGAATTCTTGTGGTTGA 2178 42.33 MDKVELSGVDDDSMEMNFDLDADDRRKRKKTKKEAVDVETKGIHHVEEDGSHRLIPKTVLSVLLVEADDSTRRIIAALLRKCSYRVSAVPDGLKAWETLKGRPHNVDLILTEVDLPSISGYALLTLVMEHDVCKNIPVIMMSSCDTVSMVLKCMLKGAADFLIKPIRKNELKNLWQHFWRRHTKISGKFPMNLTVGQREVEATSDNDEASNYSSDCVASRKKIKECSEKGSDAQSSCSTPYLEAESRCMPNMQGLSPLKDGTAPNLNMNNKKHGFSACMDKQSDILKSNIREKSDNVAKSEASNSVPSRMKEDCAFAEIRSENVVVRPDFYRVVADGACKMNSHDNKGTEPSSGVIDLIGNFDNNLKRINRVCKFDDHKKCINKLSSSNDVSTIKLDFSPQLELSLRRICPDKPKGQWNENVHALNHSNASAFSSYNSCKMMKPPSLTQPNAPTKSDTSASESPGPLQSLLSGNSGCTYQEYGVPTRNSRNNMSPNIAGGFYQAEHQILQTHLGLLPAPDLVFDKTPADHVFHSMFYMPSVLRRRPNTRSTCQQQQFPISIDATFHKCHDISNPGKVNHQCVENTHNTIERAAEELKHDSPSATHSACSSLCNVTDHINSNTYGSICSQTEGNTSSTVVGDKTAASENMNSTNVSTNEGYKGPDSPRSRHREAALEKFRLKRKDRCYEKKVRYQSRKRLAEQRPRVKGQFVRQRPSDPPASNSCG 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 101859 107177 + Lag0020528.1 Lac7g0011 612912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0011 725 MobiDBLite consensus disorder prediction 1 21 - -
Lac7g0011 725 SUPERFAMILY CheY-like 61 186 IPR011006 -
Lac7g0011 725 ProSiteProfiles Response regulatory domain profile. 61 179 IPR001789 GO:0000160(InterPro)
Lac7g0011 725 ProSiteProfiles CCT domain profile. 671 713 IPR010402 GO:0005515(InterPro)
Lac7g0011 725 SMART REC_2 60 175 IPR001789 GO:0000160(InterPro)
Lac7g0011 725 Pfam Response regulator receiver domain 62 173 IPR001789 GO:0000160(InterPro)
Lac7g0011 725 MobiDBLite consensus disorder prediction 643 662 - -
Lac7g0011 725 MobiDBLite consensus disorder prediction 443 474 - -
Lac7g0011 725 MobiDBLite consensus disorder prediction 689 725 - -
Lac7g0011 725 MobiDBLite consensus disorder prediction 643 671 - -
Lac7g0011 725 Gene3D - 61 233 - -
Lac7g0011 725 MobiDBLite consensus disorder prediction 689 710 - -
Lac7g0011 725 PANTHER TWO-COMPONENT RESPONSE REGULATOR 50 298 IPR045279 GO:0009736(InterPro)
Lac7g0011 725 Pfam CCT motif 671 713 IPR010402 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g0028 Lac-Chr4:517743 Lac7g0011 Lac-Chr7:101859 3.30E-90 dispersed
Lac7g0011 Lac-Chr7:101859 Lac7g0922 Lac-Chr7:7732095 1.80E-14 dispersed
Lac7g0011 Lac-Chr7:101859 Lac3g0598 Lac-Chr3:4642751 1.00E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24099 PF00072 Response_reg 1.60E-19 CL0304 Lac TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0011 K12130 - cit:102622921 508.834