Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0034 ATGGAAGGATCAGAAAGATCAGGGGTTCACAATTATCAAGTTCAAGTCTCCTTCCTCTCAAATGCACCGCATCCGCAACCCATCCACGAAATGGGATTCGTCCAGTTCGAAGACCACAACCAAGTCTTGAGCTTCTTGGCACCCAACAACGCCGCCACCACTGCCACTGCACCCACCTCCACCATGCCCTCTGCCTTCCCTTCGCCTCACGCCCACCTCGTCAGTAGTAGACCTTCTTGGAGTAACGAGCAGGTAGGAACACTGGATCCGAAGCCCGCTCACGACGAGAACTGCACTGGCAGCGCAAGCGACGGCAGCAATTCATGGTGGAGGAACTCGAATGCAGATAAGAATAAAGTGAAGGTGAGGAGAAAGCTGAGAGAGCCGCGTTTCTGTTTCCAGACCAGAAGCGATGTAGATGTGCTCGACGATGGCTACAAATGGAGAAAATATGGCCAAAAAGTCGTCAAGAACAGTCTTCATCCAAGAAGCTACTATCGTTGCACGCACAGCAACTGCCGAGTGAAGAAGAGGGTGGAGCGACTGTCGGAGGACTGCCGGATGGTGATCACCACCTACGAAGGCAGACACAACCACTCCCCTTGCGACGACTCCAATTCTTCAGAGCACGAACCCTTTACATCTTTCTGA 651 52.53 MEGSERSGVHNYQVQVSFLSNAPHPQPIHEMGFVQFEDHNQVLSFLAPNNAATTATAPTSTMPSAFPSPHAHLVSSRPSWSNEQVGTLDPKPAHDENCTGSASDGSNSWWRNSNADKNKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHEPFTSF 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 284013 285899 - Lag0020551.1 Lac7g0034 612935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0034 216 Pfam WRKY DNA -binding domain 143 199 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac7g0034 216 SMART WRKY_cls 142 201 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac7g0034 216 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 62 207 IPR044810 GO:0003700(InterPro)
Lac7g0034 216 FunFam WRKY transcription factor 57 128 202 - -
Lac7g0034 216 ProSiteProfiles WRKY domain profile. 137 199 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac7g0034 216 Gene3D WRKY domain 129 195 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac7g0034 216 MobiDBLite consensus disorder prediction 197 216 - -
Lac7g0034 216 SUPERFAMILY WRKY DNA-binding domain 134 200 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac7g0034 216 MobiDBLite consensus disorder prediction 66 112 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2434 Lac-Chr1:45817192 Lac7g0034 Lac-Chr7:284013 1.20E-37 dispersed
Lac7g0034 Lac-Chr7:284013 Lac8g0090 Lac-Chr8:1267928 3.20E-28 dispersed
Lac7g0034 Lac-Chr7:284013 Lac9g0429 Lac-Chr9:8038047 1.30E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24102 PF03106 WRKY 1.30E-24 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0034 - - - 0.0