Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac7g0042 | ATGGAGCAGATAAAGCAGGTCCTTACTTTTGGGGGTGGGGGGAGGAGGGGTCCTGCAAGATTGGTGGCCTTTTCGTTTAAACCTCCCTTGAAGCATGGGGTTTCGTTGCCCCCATGGTTTTATGCAGCAGAGGTTCTACTGGCACTCGAATATCTTCACATGCTTGGAGTTGTCTATAGGGACCTGAAACCAGAGAATGTACTGGTTCGTGATGATGGCCACATAATGCTCTCAGATTTCGACCTCTCACTAAGATGTGCAGTGTCACCCACCCTGATAAAAACCTCATACGATTCTGACCCATCAAAACGAGGTGCATTTTGTGTCCAGCCTGCCTGTATTGAGCCATCATCAGTTTGCATCCAACCTGCTTGCTTTATTCCTCGACTCTTCCCTCAGAAAAGCAAAAAGAAAAGTCCGAAGCCCCGAAGTGATCTGGGGTTGCAATCCAGTACACTTCCCGAGCTGGTAGCAGAGCCTACTGCTGCCCGATCCATGTCTTTTGTTGGCACCCACGAATACCTAGCCCCTGAAATTATTAAAGGAGAGGGTCATGGAAGTGCTGTCGATTGGTGGACTTTTGGCATTTTCTTGCATGAACTATTGTATGGAAAAACCCCATTTAAGGGATCGGGAAACAGAGCCACACTATTCAATGTAGTAGGGCAGCAACTGAAGTTCCCAGAATCTCCAGCAACTAGTTATGCTAGCCGAGATCTTATTCGAGGTTTACTAGTAAAGGAGCCACAGCATCGACTCGGGGTGAAGAGAGGTGCAACGGAGATCAAGCAGCATCCTTTCTTTGAAGGTGTGAATTGGGCTTTGATACGATGCAGCACGCCCCCAGAAGTGCCAAGACCAATGGAGGCCGAACTGCCTAAGTTTGGTGTAGTCGACACAACAGGGGTTGGCAGCAGCAGTAAGAGGATGGTGGGTACAGATGTTGTTAAGTCTGGTGGTCAATATCTTGACTTCGAGTTCTTTTAA | 987 | 48.13 | MEQIKQVLTFGGGGRRGPARLVAFSFKPPLKHGVSLPPWFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSYDSDPSKRGAFCVQPACIEPSSVCIQPACFIPRLFPQKSKKKSPKPRSDLGLQSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPKFGVVDTTGVGSSSKRMVGTDVVKSGGQYLDFEFF | 328 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 399941 | 401911 | - | Lag0020559.1 | Lac7g0042 | 612943 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac7g0042 | 328 | Gene3D | Transferase(Phosphotransferase) domain 1 | 163 | 285 | - | - | |
| Lac7g0042 | 328 | SUPERFAMILY | Protein kinase-like (PK-like) | 39 | 295 | IPR011009 | - | |
| Lac7g0042 | 328 | PANTHER | FLIPPASE KINASE 1-RELATED | 40 | 289 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
| Lac7g0042 | 328 | SMART | serkin_6 | 2 | 268 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lac7g0042 | 328 | Pfam | Protein kinase domain | 165 | 268 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lac7g0042 | 328 | Pfam | Protein kinase domain | 40 | 87 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lac7g0042 | 328 | ProSiteProfiles | Protein kinase domain profile. | 1 | 268 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lac7g0042 | 328 | Gene3D | Transferase(Phosphotransferase) domain 1 | 40 | 85 | - | - | |
| Lac7g0042 | 328 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 57 | 69 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lac7g0042 | 328 | FunFam | Serine/threonine-protein kinase OXI1 | 38 | 88 | - | - | |
| Lac7g0042 | 328 | FunFam | serine/threonine-protein kinase D6PK-like | 163 | 286 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac7g0042 | Lac-Chr7:399941 | Lac8g0213 | Lac-Chr8:2395477 | 5.20E-107 | dispersed | |
| Lac7g0042 | Lac-Chr7:399941 | Lac1g3129 | Lac-Chr1:51633641 | 8.60E-110 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 86301 | PF00069 | Pkinase | 1.30E-20 | CL0016 | Lac | PK |
Pathway information