Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0055 ATGGGTAAGAAGGGAGGATCCTCCTGGTTGACTGCCGTCAAAAGGGCTTTTAGATCTCCTTCCAAAGACGAAGACGACAAGAAAAGAGACAAGCGCAGATGGATTTTCCGGCGATCCACCAATCTGCACGACGCGGACACCCATCAAACGCCGCCTCCGACTAGGGAGCAGCATTCATCTTCCGAGGCGGCGCTTGCTGTCGCGGTGGCCACTGCCGAAGCTGCTATGGCCACCGCCCAGGCCGCTGTGGAGGTTGCTCGCCTCACCACCAGGCCTTCCAATCTCGCCAGAGACCACTACGCTGCAATTCTCATTCAGACTGCTTTTAGAGGCTACCTGGCAAGGAGGGCTCTGCGTGCGCTCAAGGGGCTGGTCAAGTTGCAGGCTTTGGTGAGGGGTCACAACGTCAGAAAGCAGGCTAAGATGACCCTCCGATGCATGCAAGCTCTGGTTCGAGTGCAGGCCCGTGTGCTCGATCAACGGATGAGACTCTCCCACGAAGGCACCAGGAAATCCACCTTCAGCGACACCAATAGCGTCCTCGGATCGCGTTATCTTCAGAACTTCTCCGATAGAAAATCCGTTTCTCAGTCGAGGGAAGGAAGTAGCGTTGCGGACGATTGGGATGAACGGCCCCACAGTATTGAAGAAGTGAAAGCGATGCTCCAACACAGAAAAGAGATTGCAATGAAGCGTGATAGAAATCTCCCCCAAGCCTTCTCCCAACCGATATGGCGGAGAGGTCGAAGTCCGTCCATGGGCAGTGGAGATGAGCTGGAAGAAAGACCCAAGTGGCTGGATCAATGGAATTCGAGGAAGCCATGGGAAAACAGGGGAAGAGCTTCAACCGATCAAAGAGATCCCATCAAAACAGTCGAAATCGACACCTTCCAGCCCTACTCTCACACATCCACCAACTTCCGAAGAATGACTCAAAATCAACAAAGAACAAATCCACATTCGGGCAGTTCGCCACTCCACAGGACGCAACAAAACGTACCCTCTTTCCACCACTCGCCGGCCACGCCCTCCCCGTCCAAAACCAGGCCTCTGCAAGTCCGGTCTGCTAGCCCACGCTTCGTTAGGGACGACAAAAGCGAGAACACATCCCAAACACCGAGCTTAAGGTCAAACTACTACTACAGTGGCAACTTGCTCCAACAAAGTAGGACAGGGGCGAGTAGCAGTTACAGCCAAGGCAATTGTTTGCCCAATTACATGGCAGCCACAGAGTCTGCAAAGGCCCGATTGCGGTCGCAGAGCGCGCCAAGGCAAAGGCCATCGACGCCGGAGAGGGAGAGGGGAGTTGGGTCTGCGAAGAAACGGCTGTCCTTCCCAGTCCCTGATCCAATTGGGTATGGAGTTTACGAGCGGAATTTGAGGAGTCCAAGCTTCAAGAGCGTGAGCGGGACGTACTTGGGGGTGGAGCAGCAATCCAACTATTCATCGTGCTGCACGGACAGCCTCGGCGGAGAGATTTCCCCTTCTTCAACCACCGATCTAAGAAGGTGGCTAAGGTGA 1521 54.64 MGKKGGSSWLTAVKRAFRSPSKDEDDKKRDKRRWIFRRSTNLHDADTHQTPPPTREQHSSSEAALAVAVATAEAAMATAQAAVEVARLTTRPSNLARDHYAAILIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRMRLSHEGTRKSTFSDTNSVLGSRYLQNFSDRKSVSQSREGSSVADDWDERPHSIEEVKAMLQHRKEIAMKRDRNLPQAFSQPIWRRGRSPSMGSGDELEERPKWLDQWNSRKPWENRGRASTDQRDPIKTVEIDTFQPYSHTSTNFRRMTQNQQRTNPHSGSSPLHRTQQNVPSFHHSPATPSPSKTRPLQVRSASPRFVRDDKSENTSQTPSLRSNYYYSGNLLQQSRTGASSSYSQGNCLPNYMAATESAKARLRSQSAPRQRPSTPERERGVGSAKKRLSFPVPDPIGYGVYERNLRSPSFKSVSGTYLGVEQQSNYSSCCTDSLGGEISPSSTTDLRRWLR 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 491852 493707 - Lag0020572.1 Lac7g0055 612956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0055 506 SMART iq_5 120 141 IPR000048 GO:0005515(InterPro)
Lac7g0055 506 SMART iq_5 97 119 IPR000048 GO:0005515(InterPro)
Lac7g0055 506 MobiDBLite consensus disorder prediction 411 443 - -
Lac7g0055 506 FunFam IQ-domain 11 97 148 - -
Lac7g0055 506 MobiDBLite consensus disorder prediction 1 61 - -
Lac7g0055 506 Pfam Protein of unknown function (DUF4005) 357 455 IPR025064 -
Lac7g0055 506 ProSiteProfiles IQ motif profile. 98 126 - -
Lac7g0055 506 Pfam IQ calmodulin-binding motif 101 119 IPR000048 GO:0005515(InterPro)
Lac7g0055 506 Pfam IQ calmodulin-binding motif 125 141 IPR000048 GO:0005515(InterPro)
Lac7g0055 506 MobiDBLite consensus disorder prediction 45 61 - -
Lac7g0055 506 MobiDBLite consensus disorder prediction 483 506 - -
Lac7g0055 506 Gene3D - 96 149 - -
Lac7g0055 506 MobiDBLite consensus disorder prediction 239 379 - -
Lac7g0055 506 MobiDBLite consensus disorder prediction 253 291 - -
Lac7g0055 506 MobiDBLite consensus disorder prediction 296 353 - -
Lac7g0055 506 MobiDBLite consensus disorder prediction 17 44 - -
Lac7g0055 506 PANTHER IQ-DOMAIN 5-RELATED 9 437 - -
Lac7g0055 506 ProSiteProfiles IQ motif profile. 122 149 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g0055 Lac-Chr7:491852 Lac8g2437 Lac-Chr8:42431493 4.60E-38 dispersed
Lac7g0055 Lac-Chr7:491852 Lac12g1344 Lac-Chr12:21464418 3.70E-128 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0055 - - - 0.0