Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0055 ATGGGTAAGAAGGGAGGATCCTCCTGGTTGACTGCCGTCAAAAGGGCTTTTAGATCTCCTTCCAAAGACGAAGACGACAAGAAAAGAGACAAGCGCAGATGGATTTTCCGGCGATCCACCAATCTGCACGACGCGGACACCCATCAAACGCCGCCTCCGACTAGGGAGCAGCATTCATCTTCCGAGGCGGCGCTTGCTGTCGCGGTGGCCACTGCCGAAGCTGCTATGGCCACCGCCCAGGCCGCTGTGGAGGTTGCTCGCCTCACCACCAGGCCTTCCAATCTCGCCAGAGACCACTACGCTGCAATTCTCATTCAGACTGCTTTTAGAGGCTACCTGGCAAGGAGGGCTCTGCGTGCGCTCAAGGGGCTGGTCAAGTTGCAGGCTTTGGTGAGGGGTCACAACGTCAGAAAGCAGGCTAAGATGACCCTCCGATGCATGCAAGCTCTGGTTCGAGTGCAGGCCCGTGTGCTCGATCAACGGATGAGACTCTCCCACGAAGGCACCAGGAAATCCACCTTCAGCGACACCAATAGCGTCCTCGGATCGCGTTATCTTCAGAACTTCTCCGATAGAAAATCCGTTTCTCAGTCGAGGGAAGGAAGTAGCGTTGCGGACGATTGGGATGAACGGCCCCACAGTATTGAAGAAGTGAAAGCGATGCTCCAACACAGAAAAGAGATTGCAATGAAGCGTGATAGAAATCTCCCCCAAGCCTTCTCCCAACCGATATGGCGGAGAGGTCGAAGTCCGTCCATGGGCAGTGGAGATGAGCTGGAAGAAAGACCCAAGTGGCTGGATCAATGGAATTCGAGGAAGCCATGGGAAAACAGGGGAAGAGCTTCAACCGATCAAAGAGATCCCATCAAAACAGTCGAAATCGACACCTTCCAGCCCTACTCTCACACATCCACCAACTTCCGAAGAATGACTCAAAATCAACAAAGAACAAATCCACATTCGGGCAGTTCGCCACTCCACAGGACGCAACAAAACGTACCCTCTTTCCACCACTCGCCGGCCACGCCCTCCCCGTCCAAAACCAGGCCTCTGCAAGTCCGGTCTGCTAGCCCACGCTTCGTTAGGGACGACAAAAGCGAGAACACATCCCAAACACCGAGCTTAAGGTCAAACTACTACTACAGTGGCAACTTGCTCCAACAAAGTAGGACAGGGGCGAGTAGCAGTTACAGCCAAGGCAATTGTTTGCCCAATTACATGGCAGCCACAGAGTCTGCAAAGGCCCGATTGCGGTCGCAGAGCGCGCCAAGGCAAAGGCCATCGACGCCGGAGAGGGAGAGGGGAGTTGGGTCTGCGAAGAAACGGCTGTCCTTCCCAGTCCCTGATCCAATTGGGTATGGAGTTTACGAGCGGAATTTGAGGAGTCCAAGCTTCAAGAGCGTGAGCGGGACGTACTTGGGGGTGGAGCAGCAATCCAACTATTCATCGTGCTGCACGGACAGCCTCGGCGGAGAGATTTCCCCTTCTTCAACCACCGATCTAAGAAGGTGGCTAAGGTGA 1521 54.64 MGKKGGSSWLTAVKRAFRSPSKDEDDKKRDKRRWIFRRSTNLHDADTHQTPPPTREQHSSSEAALAVAVATAEAAMATAQAAVEVARLTTRPSNLARDHYAAILIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRMRLSHEGTRKSTFSDTNSVLGSRYLQNFSDRKSVSQSREGSSVADDWDERPHSIEEVKAMLQHRKEIAMKRDRNLPQAFSQPIWRRGRSPSMGSGDELEERPKWLDQWNSRKPWENRGRASTDQRDPIKTVEIDTFQPYSHTSTNFRRMTQNQQRTNPHSGSSPLHRTQQNVPSFHHSPATPSPSKTRPLQVRSASPRFVRDDKSENTSQTPSLRSNYYYSGNLLQQSRTGASSSYSQGNCLPNYMAATESAKARLRSQSAPRQRPSTPERERGVGSAKKRLSFPVPDPIGYGVYERNLRSPSFKSVSGTYLGVEQQSNYSSCCTDSLGGEISPSSTTDLRRWLR 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 491852 493707 - Lag0020572.1 Lac7g0055 612956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0055 506 SMART iq_5 120 141 IPR000048 GO:0005515(InterPro)
Lac7g0055 506 SMART iq_5 97 119 IPR000048 GO:0005515(InterPro)
Lac7g0055 506 MobiDBLite consensus disorder prediction 411 443 - -
Lac7g0055 506 FunFam IQ-domain 11 97 148 - -
Lac7g0055 506 MobiDBLite consensus disorder prediction 1 61 - -
Lac7g0055 506 Pfam Protein of unknown function (DUF4005) 357 455 IPR025064 -
Lac7g0055 506 ProSiteProfiles IQ motif profile. 98 126 - -
Lac7g0055 506 Pfam IQ calmodulin-binding motif 101 119 IPR000048 GO:0005515(InterPro)
Lac7g0055 506 Pfam IQ calmodulin-binding motif 125 141 IPR000048 GO:0005515(InterPro)
Lac7g0055 506 MobiDBLite consensus disorder prediction 45 61 - -
Lac7g0055 506 MobiDBLite consensus disorder prediction 483 506 - -
Lac7g0055 506 Gene3D - 96 149 - -
Lac7g0055 506 MobiDBLite consensus disorder prediction 239 379 - -
Lac7g0055 506 MobiDBLite consensus disorder prediction 253 291 - -
Lac7g0055 506 MobiDBLite consensus disorder prediction 296 353 - -
Lac7g0055 506 MobiDBLite consensus disorder prediction 17 44 - -
Lac7g0055 506 PANTHER IQ-DOMAIN 5-RELATED 9 437 - -
Lac7g0055 506 ProSiteProfiles IQ motif profile. 122 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0055 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g0055 Lac-Chr7:491852 Lac8g2437 Lac-Chr8:42431493 4.60E-38 dispersed
Lac7g0055 Lac-Chr7:491852 Lac12g1344 Lac-Chr12:21464418 3.70E-128 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac8g2437 . 1 479 IQD Protein Family AT3G52290 54.6 1.4e-104 377.5
Lac3g1549 . 319 712 IQD Protein Family AT3G22190 58.3 1.4e-93 340.9
Lac2g0466 . 1 437 IQD Protein Family AT2G26180 59.5 7.0e-117 418.3
Lac1g3383 . 77 355 IQD Protein Family AT2G33990 52.3 1.5e-64 243.8
Lac5g2434 . 36 223 IQD Protein Family AT2G33990 57.1 1.7e-52 203.8
Lac5g2434 . 21 230 IQD Protein Family AT3G15050 56.6 2.8e-55 213.0
Lac8g2087 . 128 472 IQD Protein Family AT5G13460 52.4 4.2e-75 279.6
Lac7g0055 . 1 506 IQD Protein Family AT4G00820 55.1 3.9e-128 456.1
Lac12g1344 . 98 501 IQD Protein Family AT4G00820 56.8 1.0e-104 378.3
Lac7g0055 . 1 506 IQD Protein Family AT1G01110 52.4 4.4e-124 442.6
Lac12g1344 . 98 501 IQD Protein Family AT1G01110 53.0 3.4e-100 363.2
Lac4g2932 . 1 395 IQD Protein Family AT3G16490 52.3 1.0e-72 271.6
Lac3g0966 . 1 395 IQD Protein Family AT3G16490 51.8 8.7e-69 258.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54