Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0069 ATGGCACATTTCCACCATTATTCCCTTTTCATCTTTGCTGCCATTCTTTCTCTTTCACTTACTACTCCTTGCTTTTGCTTCCATCCCAAATCCTTCAATGTCTCTAAGTATCAGTCCTATGACTCCGATTGGTCCCCGGCCGTAGCCACCTGGTACGGTAGCCCTGACGGTGCCGGGAGCGATGGAGGGGCGTGTGGATATGGGAAAGCGGTGGAGCAACCACCATTTTCGTCGTTAATTGCGGCGGGAGGCCCTTCCTTGTACAAGTCCGGCAAGGCCTGTGGAGCTTGTTATCAGGTGAAGTGCTCGGGAGAGGCTGCATGCTCAGGGAATCCGGTCACGGTGGTTATAACTGATAGTTGCCCCGGCGGCTCGTGTGCTTCCGACGCCGTCCACTTTGACCTCAGCGGCACTGCTTTTGGTGCTATGGCTGCAACTGGCCGTGGCGATGAACTTCGCAATCTCGGCGTTTTGCAGATTCAACATAAAAGGGTGGAATGCAATTATCCGGGAACGTCGATCAACTTCATCGTGGACTCGGGGTCGAACCCGAACTATTTCGCAGCTCTGATCGAATACGAAGATGGAGATGGAGAACTTGGTTCAGTGGAGCTGAAACCTCAAGACTCGTACTCATGGATTCAAATGAAGCAGTCATGGGGTGCAGTTTGGAAACTGGACTCCGGCTCCGCCCTTCACGCTCCCTTCTCCGTCAGGCTCACCGCCCTCGACTCCGGCAAGACCGTGGTCGCCAACAATGTAATCCCGGCCGGGTGGCAGCCGGGGCAGACTTATAGATCTGTGGTCAACTTCGACACTTAA 822 54.01 MAHFHHYSLFIFAAILSLSLTTPCFCFHPKSFNVSKYQSYDSDWSPAVATWYGSPDGAGSDGGACGYGKAVEQPPFSSLIAAGGPSLYKSGKACGACYQVKCSGEAACSGNPVTVVITDSCPGGSCASDAVHFDLSGTAFGAMAATGRGDELRNLGVLQIQHKRVECNYPGTSINFIVDSGSNPNYFAALIEYEDGDGELGSVELKPQDSYSWIQMKQSWGAVWKLDSGSALHAPFSVRLTALDSGKTVVANNVIPAGWQPGQTYRSVVNFDT 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 603760 604978 - Lag0020586.1 Lac7g0069 612970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0069 273 Pfam Lytic transglycolase 81 149 IPR009009 -
Lac7g0069 273 CDD DPBB_EXPB_N 44 167 - -
Lac7g0069 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 185 267 IPR007117 -
Lac7g0069 273 SUPERFAMILY PHL pollen allergen 173 267 IPR036749 -
Lac7g0069 273 Gene3D - 29 168 IPR036908 -
Lac7g0069 273 PANTHER EXPANSIN-B3 17 271 - -
Lac7g0069 273 SMART dpbb_1 80 162 IPR007112 -
Lac7g0069 273 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Lac7g0069 273 PRINTS Expansin/Lol pI family signature 84 102 IPR007118 GO:0005576(InterPro)
Lac7g0069 273 PRINTS Expansin/Lol pI family signature 155 171 IPR007118 GO:0005576(InterPro)
Lac7g0069 273 PRINTS Expansin/Lol pI family signature 213 227 IPR007118 GO:0005576(InterPro)
Lac7g0069 273 PRINTS Expansin/Lol pI family signature 253 267 IPR007118 GO:0005576(InterPro)
Lac7g0069 273 PRINTS Expansin/Lol pI family signature 43 58 IPR007118 GO:0005576(InterPro)
Lac7g0069 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 62 172 IPR007112 -
Lac7g0069 273 Pfam Expansin C-terminal domain 174 256 IPR007117 -
Lac7g0069 273 Gene3D - 169 271 IPR036749 -
Lac7g0069 273 PRINTS Major pollen allergen Lol pI signature 192 207 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lac7g0069 273 PRINTS Major pollen allergen Lol pI signature 176 191 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lac7g0069 273 PRINTS Major pollen allergen Lol pI signature 144 159 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lac7g0069 273 PRINTS Major pollen allergen Lol pI signature 122 137 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lac7g0069 273 PRINTS Major pollen allergen Lol pI signature 222 239 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lac7g0069 273 PRINTS Major pollen allergen Lol pI signature 82 93 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lac7g0069 273 SUPERFAMILY Barwin-like endoglucanases 37 171 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0702 Lac-Chr12:7265501 Lac7g0069 Lac-Chr7:603760 4.00E-66 dispersed
Lac7g0069 Lac-Chr7:603760 Lac7g1274 Lac-Chr7:12188736 3.10E-20 dispersed
Lac7g0069 Lac-Chr7:603760 Lac9g2157 Lac-Chr9:41043763 6.30E-66 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0069 - - - 0.0