Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0087 ATGGGCGGGAGAGATGATGAGTTAGGGTTGAGTTTGAGTTTAGGGTTTGGAGTTTCGACTCAGCCTTCGTTTCAGCCGACTCACATGCAGAGGCCGATGAACTCCATGCATAATCACCTCCGGAAGAGTTCTTGGAATGAGCTTTTTCAATTTTCGGATCGGAACGCCGATTCGAGGTCGTTTCTTAGGGGAATCGACGTGAATCGACTGCCGACGGCGGTGGATGGCGAGGAAGAGAACGGCGTTTCGTCTCCGAACAGTACGATTTCTAGCATCAGTGGGAAGAGGAGCGAGAGAGAAGCAGTCGGAGACGAGGCGGAGGCGGAGGCAGAAGCGGAAGCCGAGAGAGCATCGTGCTCGCGAGGTAGCGACGACGAAGACGGCGGCGGAGGCGACGGCGACGCCTCGAGAAAGAAGCTGAGACTATCGAAGGAACAGTCGATGGTTCTTGAGGAGACCTTCAAAGAGCACAATACGCTCAATCCAAAGCAAAAGCTGGCACTTGCAAAGCAGCTGAATCTGAGACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCAAGGACCAAGTTGAAGCAGACAGAAGTGGACTGTGAGTACTTGAAGAGGTGCTGTGAGAATCTAACAGAGGAAAACAGAAGGCTACAGAAGGAGGTGCAAGAGTTGAGAGCACTCAAGCTTTCTCCACAGCTCTATATGCACATGAATCCTCCCACCACTCTCACCATGTGCCCTCAGTGTGAGCGTGTGGCCGTTTCCTCGTCTTCTTCGACCTCAGCCGCTCCGACCCGCCATCCCGCTGGTGTGCAGCGTCCCTCGATGGCCATCAACCCATGGGCGGTGTTGCCGATCCAGCGTTGA 864 54.17 MGGRDDELGLSLSLGFGVSTQPSFQPTHMQRPMNSMHNHLRKSSWNELFQFSDRNADSRSFLRGIDVNRLPTAVDGEEENGVSSPNSTISSISGKRSEREAVGDEAEAEAEAEAERASCSRGSDDEDGGGGDGDASRKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSSTSAAPTRHPAGVQRPSMAINPWAVLPIQR 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 738420 740284 + Lag0020604.1 Lac7g0087 612988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0087 287 SMART halz 193 236 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac7g0087 287 MobiDBLite consensus disorder prediction 79 95 - -
Lac7g0087 287 CDD homeodomain 137 194 IPR001356 GO:0003677(InterPro)
Lac7g0087 287 MobiDBLite consensus disorder prediction 112 138 - -
Lac7g0087 287 Coils Coil 199 229 - -
Lac7g0087 287 Pfam Homeodomain 137 191 IPR001356 GO:0003677(InterPro)
Lac7g0087 287 Gene3D - 130 198 - -
Lac7g0087 287 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 7 264 IPR050762 -
Lac7g0087 287 SMART HOX_1 135 197 IPR001356 GO:0003677(InterPro)
Lac7g0087 287 FunFam Homeobox-leucine zipper protein 18 122 198 - -
Lac7g0087 287 SUPERFAMILY Homeodomain-like 123 194 IPR009057 -
Lac7g0087 287 MobiDBLite consensus disorder prediction 74 138 - -
Lac7g0087 287 Pfam HD-ZIP protein N terminus 1 100 IPR006712 GO:0005634(InterPro)
Lac7g0087 287 Pfam Homeobox associated leucine zipper 193 227 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac7g0087 287 ProSitePatterns 'Homeobox' domain signature. 168 191 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac7g0087 287 ProSiteProfiles 'Homeobox' domain profile. 133 193 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0372 Lac-Chr5:3914509 Lac7g0087 Lac-Chr7:738420 7.40E-70 dispersed
Lac5g1885 Lac-Chr5:37163796 Lac7g0087 Lac-Chr7:738420 1.50E-46 dispersed
Lac7g0087 Lac-Chr7:738420 Lac8g1538 Lac-Chr8:32998377 6.70E-34 dispersed
Lac7g0087 Lac-Chr7:738420 Lac4g2689 Lac-Chr4:45861947 3.30E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24109 PF04618 HD-ZIP_N 3.20E-31 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0087 K09338 - csv:101222132 432.565