Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac7g0087 | ATGGGCGGGAGAGATGATGAGTTAGGGTTGAGTTTGAGTTTAGGGTTTGGAGTTTCGACTCAGCCTTCGTTTCAGCCGACTCACATGCAGAGGCCGATGAACTCCATGCATAATCACCTCCGGAAGAGTTCTTGGAATGAGCTTTTTCAATTTTCGGATCGGAACGCCGATTCGAGGTCGTTTCTTAGGGGAATCGACGTGAATCGACTGCCGACGGCGGTGGATGGCGAGGAAGAGAACGGCGTTTCGTCTCCGAACAGTACGATTTCTAGCATCAGTGGGAAGAGGAGCGAGAGAGAAGCAGTCGGAGACGAGGCGGAGGCGGAGGCAGAAGCGGAAGCCGAGAGAGCATCGTGCTCGCGAGGTAGCGACGACGAAGACGGCGGCGGAGGCGACGGCGACGCCTCGAGAAAGAAGCTGAGACTATCGAAGGAACAGTCGATGGTTCTTGAGGAGACCTTCAAAGAGCACAATACGCTCAATCCAAAGCAAAAGCTGGCACTTGCAAAGCAGCTGAATCTGAGACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCAAGGACCAAGTTGAAGCAGACAGAAGTGGACTGTGAGTACTTGAAGAGGTGCTGTGAGAATCTAACAGAGGAAAACAGAAGGCTACAGAAGGAGGTGCAAGAGTTGAGAGCACTCAAGCTTTCTCCACAGCTCTATATGCACATGAATCCTCCCACCACTCTCACCATGTGCCCTCAGTGTGAGCGTGTGGCCGTTTCCTCGTCTTCTTCGACCTCAGCCGCTCCGACCCGCCATCCCGCTGGTGTGCAGCGTCCCTCGATGGCCATCAACCCATGGGCGGTGTTGCCGATCCAGCGTTGA | 864 | 54.17 | MGGRDDELGLSLSLGFGVSTQPSFQPTHMQRPMNSMHNHLRKSSWNELFQFSDRNADSRSFLRGIDVNRLPTAVDGEEENGVSSPNSTISSISGKRSEREAVGDEAEAEAEAEAERASCSRGSDDEDGGGGDGDASRKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSSTSAAPTRHPAGVQRPSMAINPWAVLPIQR | 287 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 738420 | 740284 | + | Lag0020604.1 | Lac7g0087 | 612988 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac7g0087 | 287 | SMART | halz | 193 | 236 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac7g0087 | 287 | MobiDBLite | consensus disorder prediction | 79 | 95 | - | - | |
Lac7g0087 | 287 | CDD | homeodomain | 137 | 194 | IPR001356 | GO:0003677(InterPro) | |
Lac7g0087 | 287 | MobiDBLite | consensus disorder prediction | 112 | 138 | - | - | |
Lac7g0087 | 287 | Coils | Coil | 199 | 229 | - | - | |
Lac7g0087 | 287 | Pfam | Homeodomain | 137 | 191 | IPR001356 | GO:0003677(InterPro) | |
Lac7g0087 | 287 | Gene3D | - | 130 | 198 | - | - | |
Lac7g0087 | 287 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 7 | 264 | IPR050762 | - | |
Lac7g0087 | 287 | SMART | HOX_1 | 135 | 197 | IPR001356 | GO:0003677(InterPro) | |
Lac7g0087 | 287 | FunFam | Homeobox-leucine zipper protein 18 | 122 | 198 | - | - | |
Lac7g0087 | 287 | SUPERFAMILY | Homeodomain-like | 123 | 194 | IPR009057 | - | |
Lac7g0087 | 287 | MobiDBLite | consensus disorder prediction | 74 | 138 | - | - | |
Lac7g0087 | 287 | Pfam | HD-ZIP protein N terminus | 1 | 100 | IPR006712 | GO:0005634(InterPro) | |
Lac7g0087 | 287 | Pfam | Homeobox associated leucine zipper | 193 | 227 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac7g0087 | 287 | ProSitePatterns | 'Homeobox' domain signature. | 168 | 191 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Lac7g0087 | 287 | ProSiteProfiles | 'Homeobox' domain profile. | 133 | 193 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac5g0372 | Lac-Chr5:3914509 | Lac7g0087 | Lac-Chr7:738420 | 7.40E-70 | dispersed | |
Lac5g1885 | Lac-Chr5:37163796 | Lac7g0087 | Lac-Chr7:738420 | 1.50E-46 | dispersed | |
Lac7g0087 | Lac-Chr7:738420 | Lac8g1538 | Lac-Chr8:32998377 | 6.70E-34 | dispersed | |
Lac7g0087 | Lac-Chr7:738420 | Lac4g2689 | Lac-Chr4:45861947 | 3.30E-49 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24109 | PF04618 | HD-ZIP_N | 3.20E-31 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac7g0087 | K09338 | - | csv:101222132 | 432.565 |