Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0117 ATGGAGTTTCCTGATACTGCTGCCGAGAAAGACCCAACTGGTCGATACGTTCGGTACGATGAAATCTTGGGAAGAGGCGCTTTCAAGACAGTTTACAAGGCATTCGATGAAGTTGATGGAATTGAAGTTGCCTGGAACCAAGTTAGGATTGATGGTTTCTTGCAGTCACCTGAGGATTTAGAAAAGTTGTACTCCGAAGTACATCTACTTAAATCATTAAAACATGAGAATATTATCAAGTTCTATAATTCTTGGGTTGATGATAAGAAGAAAACAGTCAACATGATCACTGAGCTCTTCACATCTGGGAGTTTGAGGCAATACCGTAAAAAACATAAACATGTTGATATGAAGGCCATAAAGAATTGGGCACGACAGATTCTTCGGGGGTTGGTCTATCTTCATAGTCACAATCCTCCCATTATTCATAGAGATTTGAAAGGTGATAATATTTTTATTAATGGAAATCATGGAGAAGTTAAAATTGGAGATCTTGGATTAGCAATTGTTATGCAGCAGCCTACTGCCCAAAGTGTAATTGGAACTCCTGAGTTCATGGCTCCGGAGCTTTACGAAGAGGAGTACAATGAGCTTGTTGATGTATATTCGTTTGGGATGTGCATCCTGGAGATGGTCACCTTTGAGTATCCGTATAGTGAATGTAAAAATCCAGCTCAGATCTACAGGAAAGTTACATCTGGTATTAAACCTGCTTCCCTTGCTAAGGTGATTGATCCACAGACCATGGAGTTCATCAATAAATGTTTGGTTCCAGTGCACGAGAGGCTGTCTGCAAAAGAGCTTCTTAAAGATCCATTCCTTCAAGTTGGGAACCCAAAGGAATCAACACGTGAACCCCTACGGTTTCCTAACCATGTTCCTAAATCAATAAATTTGCCAAAGAGCGGGCCTATTTCCATGGACATTGACATTGACCACAAACAACATTCTGTAAGCACTTGTGCTGGAAGCAATAGTGGGAGTCCACGCTTTCCAGCTATGGAATTCCAGACTATGAATAAGAACAATGAGTTTAGGTTACGTGGAAATAAGAATGATGACAACTCTGTGGCATTAACCTTGCGAATTGCAGACTTGAATGGTCGAGTGAGGAATATACATTTTACGTTTTATCTCGATTCTGATACTGCACTATCAGTGGCAGCTGAAATGGCTGAACAATTGGAGTTGATAGATCATGATGTGGATTTCATAGCTGAATTTATCGATTTCTTGATAATAAAACTTATACCTGGTTGGAAGCCCTTGACTGATACTTCCTCGAATGGAGCGTCAGGTCTTTGTGGCGGCCCCCCTAACTTTAAAAGTGCCAAATCATCTATGCCATGTCCATGGGATTCATTGGTAACTGGGGTTCATGATAGGTTGGTCGAACAAAACATTCCCACTGTGTTAGTGAGTTGTACTCAAAAGGATTGTCTGCAATCTGGAGTTGGCTGGGCTGATGATATTCCCAGTAGTCATATTTTTGATACTTGCCCTTCTTCTCCCAGTTTGGCTAATTTTGAGGAACTGAATTCACATGCTTTATTTGCATCAGAGTTGGTCGAGGATTGTTCTACCAAAAGTGATAAGGTGATAGATTGTTCCAATATTGATGGAAGCTCAAAAGGCTCGAGTTGGTCGATTGCAGAACTAGAGCTCCACGGTTCGTCATATGTTGAAGATAAACTGCAACGAAATGTTAGTGATGTTGGAACCTTCACTCCCATGGATTATTTTGTGAAGAACTCAGTTGTGTCATTGCCTGCTCCAAGTGAAGCATCTAATGTGATGAGCTTGACAAGCAGTTGTTCTTCGCTATCCTTAGCGGACAAGGATCTCGATGCCGAACTCAAGATGGAACTCAATGCCATCGAGACGCATTATCAGCAGTTGTTCGACGAGCTTTCTCGAATGAGAGAGGAAGCACTAGAGGCCACCAGAAAGAGATGGATTGCAAAGAAGAAACTGATCCATTGA 1983 41.4 MEFPDTAAEKDPTGRYVRYDEILGRGAFKTVYKAFDEVDGIEVAWNQVRIDGFLQSPEDLEKLYSEVHLLKSLKHENIIKFYNSWVDDKKKTVNMITELFTSGSLRQYRKKHKHVDMKAIKNWARQILRGLVYLHSHNPPIIHRDLKGDNIFINGNHGEVKIGDLGLAIVMQQPTAQSVIGTPEFMAPELYEEEYNELVDVYSFGMCILEMVTFEYPYSECKNPAQIYRKVTSGIKPASLAKVIDPQTMEFINKCLVPVHERLSAKELLKDPFLQVGNPKESTREPLRFPNHVPKSINLPKSGPISMDIDIDHKQHSVSTCAGSNSGSPRFPAMEFQTMNKNNEFRLRGNKNDDNSVALTLRIADLNGRVRNIHFTFYLDSDTALSVAAEMAEQLELIDHDVDFIAEFIDFLIIKLIPGWKPLTDTSSNGASGLCGGPPNFKSAKSSMPCPWDSLVTGVHDRLVEQNIPTVLVSCTQKDCLQSGVGWADDIPSSHIFDTCPSSPSLANFEELNSHALFASELVEDCSTKSDKVIDCSNIDGSSKGSSWSIAELELHGSSYVEDKLQRNVSDVGTFTPMDYFVKNSVVSLPAPSEASNVMSLTSSCSSLSLADKDLDAELKMELNAIETHYQQLFDELSRMREEALEATRKRWIAKKKLIH 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 935475 938573 - Lag0020634.1 Lac7g0117 613018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0117 660 Gene3D Transferase(Phosphotransferase) domain 1 100 278 - -
Lac7g0117 660 SUPERFAMILY Protein kinase-like (PK-like) 19 275 IPR011009 -
Lac7g0117 660 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac7g0117 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac7g0117 660 FunFam Probable serine/threonine-protein kinase WNK1 3 98 - -
Lac7g0117 660 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Lac7g0117 660 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 7 646 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Lac7g0117 660 FunFam probable serine/threonine-protein kinase WNK9 100 279 - -
Lac7g0117 660 Coils Coil 623 650 - -
Lac7g0117 660 SMART serkin_6 17 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac7g0117 660 ProSiteProfiles Protein kinase domain profile. 17 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac7g0117 660 CDD STKc_WNK 15 274 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1940 Lac-Chr11:34886319 Lac7g0117 Lac-Chr7:935475 5.50E-174 dispersed
Lac7g0117 Lac-Chr7:935475 Lac9g2333 Lac-Chr9:42656667 1.20E-118 dispersed
Lac7g0117 Lac-Chr7:935475 Lac12g2279 Lac-Chr12:39919600 2.30E-130 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86304 PF00069 Pkinase 6.30E-55 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0117 K08867 - csv:101204101 1120.53