Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac7g0130 | ATGAAGATTGAAGATGGGTTGCGGAGTGTGGGTGGGAAGGATGAGGATAAGACTGTGGTTGCTGCTGTTTTGGGGACTCGGGCTTTTAATTACTTGATGTCTTGCTCTGTTTCGAATGAGAATCTGTTTATGGCTGTGAGGAATGATGATAATTTGCAGAACAAGCTCTCGGATCTGGTGGAGAGACCTAACGCTTCTAATTTCAGCTGGAACTATGCAATTTTCTGGCAACTTTCCCATTCGAAATCTGGTGAATGGGTTTTGGGATGGGGAGATGGATCGTGTAGAGATCCTAGGGATGGGGAGGAAACAGAAGCTACACAGATTCTTAGCCTTCGGCTTGAAGATGAGAGCCAACAGAGGATGAAGAAAAGAGCACTGCAGAAGCTTCACACACTCTTTGGAGGCTCTGATGAGGATAATTATGCTCTTGGGTTGGACAGAGTTACTGATACTGAAATGTTTTTTCTTGCTTCCATGTATTTCTCCTTCCCTCGTGGAGAGGGGGGCCCTGGGAAGTGTTTGGCTTCTGGGAAACATGTCTGGCATTTGGATGTGCTCAATTCGCCTGCTGAGTATTGTGTGAGATCGTATCTGGCGAAATCTGCAGGAATTCGGACGGTTGTTTTGGTGCCGACTGATGTTGGAGTGGTTGAATTGGGTTCTGTCAGATCTGTGAGTGAGAGCTTAGAGTTAGTGCAATTGATTAGATCATTGTTTTCATCTCAACATTCACTTGATAGGGTGAGGACGTCAGCTGCGATGCCGATTGTGGCTGAAAGAAAGGATGAAAACACACCCTTTGCGAGTTTGGGGATTGCAGAAAGAGGAGAAGGAGGAGGAGGGATTCCTAAAGTTTTTGGGCAGACTTTGAATTCCGGGAACATGGGCCGATCTCATTTCAGAGAGAAACTGGCGATTAGGAAGATGGATGAGAGGTCATGGGAAGCATGTGCGAATGGAGGTAGAATTCAATTTCAAAGCCCCCGAAATGGCATTCGCAGTCCGAGTTTGGCACATGTTCAAGCTCTCAAGCAGGGAAATCCTACAGAAATTTTTGGCTCTCCAACTCCACCAGCAAACAACAATCCCGAGCAACTTGTCAATGGAGTCAGAGATGAATTTTGTCTCAATCCCTATCAATCACAGAAGCTGGTCCAAATGCAAATTGATTTTTCTGTGGCAACATCAAGGCCTGCTGTGATTAACCGTGTAGGTGCGGATTCAGAGCATTCAGATGTAGAACCTCAATGCAAAGAAGAGGGGCCTTGTACTGACGAAAGACGACCACGCAAACGAGGCAGAAAGCCTGCAAATGGCAGGGAGGAACCACTAAATCACGTGGAGGCAGAGAGGCAGCGCCGTGAAAAGTTGAACCAGCGGTTCTATGCTTTACGAGCTGTTGTGCCCAATATCTCCAAGATGGACAAAGCTTCCTTGCTGGGAGATGCCATTGCTTACATCAATGAGCTTCAAGCAAAAGTGAAGGCTATGGAATTTGAACGGGAGAAATCTGGTGTCACCTCAAGTGAAGCAACCCCTTCAGAGGTGAACCCCGAAATTGAAAACAAAGATCAATTCCTTGATGTCGACGTCGACGTCGAAGCGGCTAATGATGAAGTCATCGTGAAGGTTAGCTGCCCATTAGAGACACACCCTGCATCAAGAGTTATCAAGGCAATGAAAGATGCTCAGATCAATGTTGTTGATTCGAAACTCTCTGAAGCAAACGATACAGTTTTGCACACATTTGTCATCAAGTCTCCCGGATCGGAGCAGTTGACGAAGGAACAGTTGATAGCCGCATTTTCCCAGGATTCCACTCCGTTACATCCTCTGTCAACAGTTGGGTAG | 1854 | 46.44 | MKIEDGLRSVGGKDEDKTVVAAVLGTRAFNYLMSCSVSNENLFMAVRNDDNLQNKLSDLVERPNASNFSWNYAIFWQLSHSKSGEWVLGWGDGSCRDPRDGEETEATQILSLRLEDESQQRMKKRALQKLHTLFGGSDEDNYALGLDRVTDTEMFFLASMYFSFPRGEGGPGKCLASGKHVWHLDVLNSPAEYCVRSYLAKSAGIRTVVLVPTDVGVVELGSVRSVSESLELVQLIRSLFSSQHSLDRVRTSAAMPIVAERKDENTPFASLGIAERGEGGGGIPKVFGQTLNSGNMGRSHFREKLAIRKMDERSWEACANGGRIQFQSPRNGIRSPSLAHVQALKQGNPTEIFGSPTPPANNNPEQLVNGVRDEFCLNPYQSQKLVQMQIDFSVATSRPAVINRVGADSEHSDVEPQCKEEGPCTDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKVKAMEFEREKSGVTSSEATPSEVNPEIENKDQFLDVDVDVEAANDEVIVKVSCPLETHPASRVIKAMKDAQINVVDSKLSEANDTVLHTFVIKSPGSEQLTKEQLIAAFSQDSTPLHPLSTVG | 617 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 1037659 | 1039512 | + | Lag0020647.1 | Lac7g0130 | 613031 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac7g0130 | 617 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 442 | 491 | IPR011598 | GO:0046983(InterPro) | |
Lac7g0130 | 617 | MobiDBLite | consensus disorder prediction | 408 | 453 | - | - | |
Lac7g0130 | 617 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 445 | 504 | IPR036638 | GO:0046983(InterPro) | |
Lac7g0130 | 617 | Gene3D | - | 435 | 505 | IPR036638 | GO:0046983(InterPro) | |
Lac7g0130 | 617 | SMART | finulus | 448 | 497 | IPR011598 | GO:0046983(InterPro) | |
Lac7g0130 | 617 | MobiDBLite | consensus disorder prediction | 406 | 453 | - | - | |
Lac7g0130 | 617 | CDD | bHLH_AtAIB_like | 439 | 512 | - | - | |
Lac7g0130 | 617 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 52 | 240 | IPR025610 | - | |
Lac7g0130 | 617 | PANTHER | MYC | 41 | 606 | IPR045084 | GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER) | |
Lac7g0130 | 617 | FunFam | Transcription factor bHLH13 | 435 | 508 | - | - | |
Lac7g0130 | 617 | Pfam | Helix-loop-helix DNA-binding domain | 446 | 492 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g2414 | Lac-Chr11:40380498 | Lac7g0130 | Lac-Chr7:1037659 | 2.50E-58 | dispersed | |
Lac11g2634 | Lac-Chr11:42343405 | Lac7g0130 | Lac-Chr7:1037659 | 3.50E-78 | dispersed | |
Lac12g0979 | Lac-Chr12:11248693 | Lac7g0130 | Lac-Chr7:1037659 | 1.10E-22 | dispersed | |
Lac12g1996 | Lac-Chr12:36833477 | Lac7g0130 | Lac-Chr7:1037659 | 2.50E-10 | dispersed | |
Lac5g1857 | Lac-Chr5:36810156 | Lac7g0130 | Lac-Chr7:1037659 | 1.70E-11 | dispersed | |
Lac7g0130 | Lac-Chr7:1037659 | Lac8g0052 | Lac-Chr8:843746 | 1.30E-10 | dispersed | |
Lac7g0130 | Lac-Chr7:1037659 | Lac5g0235 | Lac-Chr5:2102466 | 3.20E-65 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24112 | PF14215 | bHLH-MYC_N | 1.80E-53 | CL0161 | Lac | TF |
Pathway information
