Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0130 ATGAAGATTGAAGATGGGTTGCGGAGTGTGGGTGGGAAGGATGAGGATAAGACTGTGGTTGCTGCTGTTTTGGGGACTCGGGCTTTTAATTACTTGATGTCTTGCTCTGTTTCGAATGAGAATCTGTTTATGGCTGTGAGGAATGATGATAATTTGCAGAACAAGCTCTCGGATCTGGTGGAGAGACCTAACGCTTCTAATTTCAGCTGGAACTATGCAATTTTCTGGCAACTTTCCCATTCGAAATCTGGTGAATGGGTTTTGGGATGGGGAGATGGATCGTGTAGAGATCCTAGGGATGGGGAGGAAACAGAAGCTACACAGATTCTTAGCCTTCGGCTTGAAGATGAGAGCCAACAGAGGATGAAGAAAAGAGCACTGCAGAAGCTTCACACACTCTTTGGAGGCTCTGATGAGGATAATTATGCTCTTGGGTTGGACAGAGTTACTGATACTGAAATGTTTTTTCTTGCTTCCATGTATTTCTCCTTCCCTCGTGGAGAGGGGGGCCCTGGGAAGTGTTTGGCTTCTGGGAAACATGTCTGGCATTTGGATGTGCTCAATTCGCCTGCTGAGTATTGTGTGAGATCGTATCTGGCGAAATCTGCAGGAATTCGGACGGTTGTTTTGGTGCCGACTGATGTTGGAGTGGTTGAATTGGGTTCTGTCAGATCTGTGAGTGAGAGCTTAGAGTTAGTGCAATTGATTAGATCATTGTTTTCATCTCAACATTCACTTGATAGGGTGAGGACGTCAGCTGCGATGCCGATTGTGGCTGAAAGAAAGGATGAAAACACACCCTTTGCGAGTTTGGGGATTGCAGAAAGAGGAGAAGGAGGAGGAGGGATTCCTAAAGTTTTTGGGCAGACTTTGAATTCCGGGAACATGGGCCGATCTCATTTCAGAGAGAAACTGGCGATTAGGAAGATGGATGAGAGGTCATGGGAAGCATGTGCGAATGGAGGTAGAATTCAATTTCAAAGCCCCCGAAATGGCATTCGCAGTCCGAGTTTGGCACATGTTCAAGCTCTCAAGCAGGGAAATCCTACAGAAATTTTTGGCTCTCCAACTCCACCAGCAAACAACAATCCCGAGCAACTTGTCAATGGAGTCAGAGATGAATTTTGTCTCAATCCCTATCAATCACAGAAGCTGGTCCAAATGCAAATTGATTTTTCTGTGGCAACATCAAGGCCTGCTGTGATTAACCGTGTAGGTGCGGATTCAGAGCATTCAGATGTAGAACCTCAATGCAAAGAAGAGGGGCCTTGTACTGACGAAAGACGACCACGCAAACGAGGCAGAAAGCCTGCAAATGGCAGGGAGGAACCACTAAATCACGTGGAGGCAGAGAGGCAGCGCCGTGAAAAGTTGAACCAGCGGTTCTATGCTTTACGAGCTGTTGTGCCCAATATCTCCAAGATGGACAAAGCTTCCTTGCTGGGAGATGCCATTGCTTACATCAATGAGCTTCAAGCAAAAGTGAAGGCTATGGAATTTGAACGGGAGAAATCTGGTGTCACCTCAAGTGAAGCAACCCCTTCAGAGGTGAACCCCGAAATTGAAAACAAAGATCAATTCCTTGATGTCGACGTCGACGTCGAAGCGGCTAATGATGAAGTCATCGTGAAGGTTAGCTGCCCATTAGAGACACACCCTGCATCAAGAGTTATCAAGGCAATGAAAGATGCTCAGATCAATGTTGTTGATTCGAAACTCTCTGAAGCAAACGATACAGTTTTGCACACATTTGTCATCAAGTCTCCCGGATCGGAGCAGTTGACGAAGGAACAGTTGATAGCCGCATTTTCCCAGGATTCCACTCCGTTACATCCTCTGTCAACAGTTGGGTAG 1854 46.44 MKIEDGLRSVGGKDEDKTVVAAVLGTRAFNYLMSCSVSNENLFMAVRNDDNLQNKLSDLVERPNASNFSWNYAIFWQLSHSKSGEWVLGWGDGSCRDPRDGEETEATQILSLRLEDESQQRMKKRALQKLHTLFGGSDEDNYALGLDRVTDTEMFFLASMYFSFPRGEGGPGKCLASGKHVWHLDVLNSPAEYCVRSYLAKSAGIRTVVLVPTDVGVVELGSVRSVSESLELVQLIRSLFSSQHSLDRVRTSAAMPIVAERKDENTPFASLGIAERGEGGGGIPKVFGQTLNSGNMGRSHFREKLAIRKMDERSWEACANGGRIQFQSPRNGIRSPSLAHVQALKQGNPTEIFGSPTPPANNNPEQLVNGVRDEFCLNPYQSQKLVQMQIDFSVATSRPAVINRVGADSEHSDVEPQCKEEGPCTDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKVKAMEFEREKSGVTSSEATPSEVNPEIENKDQFLDVDVDVEAANDEVIVKVSCPLETHPASRVIKAMKDAQINVVDSKLSEANDTVLHTFVIKSPGSEQLTKEQLIAAFSQDSTPLHPLSTVG 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1037659 1039512 + Lag0020647.1 Lac7g0130 613031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0130 617 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 442 491 IPR011598 GO:0046983(InterPro)
Lac7g0130 617 MobiDBLite consensus disorder prediction 408 453 - -
Lac7g0130 617 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 445 504 IPR036638 GO:0046983(InterPro)
Lac7g0130 617 Gene3D - 435 505 IPR036638 GO:0046983(InterPro)
Lac7g0130 617 SMART finulus 448 497 IPR011598 GO:0046983(InterPro)
Lac7g0130 617 MobiDBLite consensus disorder prediction 406 453 - -
Lac7g0130 617 CDD bHLH_AtAIB_like 439 512 - -
Lac7g0130 617 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 240 IPR025610 -
Lac7g0130 617 PANTHER MYC 41 606 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)
Lac7g0130 617 FunFam Transcription factor bHLH13 435 508 - -
Lac7g0130 617 Pfam Helix-loop-helix DNA-binding domain 446 492 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2414 Lac-Chr11:40380498 Lac7g0130 Lac-Chr7:1037659 2.50E-58 dispersed
Lac11g2634 Lac-Chr11:42343405 Lac7g0130 Lac-Chr7:1037659 3.50E-78 dispersed
Lac12g0979 Lac-Chr12:11248693 Lac7g0130 Lac-Chr7:1037659 1.10E-22 dispersed
Lac12g1996 Lac-Chr12:36833477 Lac7g0130 Lac-Chr7:1037659 2.50E-10 dispersed
Lac5g1857 Lac-Chr5:36810156 Lac7g0130 Lac-Chr7:1037659 1.70E-11 dispersed
Lac7g0130 Lac-Chr7:1037659 Lac8g0052 Lac-Chr8:843746 1.30E-10 dispersed
Lac7g0130 Lac-Chr7:1037659 Lac5g0235 Lac-Chr5:2102466 3.20E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24112 PF14215 bHLH-MYC_N 1.80E-53 CL0161 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0130 - - - 0.0