Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0142 ATGTCCAAGTTTATGGGTTCCCAGATACCAAAATCTCTAAGGTTTGGACAGCCAACTTATGATTTCCATGACAAATATGGTGGTTACCAAAACAGCAGGCTGTCTCCAAGGTCCATATTGGAGTGCATACAGAGAAGTTTTTCAAGTGCTTCTGAGAGCTTTAGAAGGACAGTGATGAACTTAGGCTTCAAGAATTCAGGTGATCAGTCAGTAAAGAAACCAAAATTTTGGAAGAAAATTCTTGATCCACAGAAGCCATTTCTTCAGCAATGGAACAAGATATTTGTGCTGTCCTCTGTCGTAGCAGTAGCTGTGGACCCTCTCTTCTTCTACATCCCAGTGTTTGATAAAGAACATCGATGCCTAACCATGGACCGACAGCTTATGATCATTGCCAGTGTTCTTCGTTCATTCATTGACTTATTTTATCTACTTCACATGATCTTTGAATTTCGAACTGGTTTTCTGCCCCCTTCTTTACCAGTATTTGGAAGTGGTGAATTAAGCAAAGATCCAGCAGCAATAGCAAAGAGATACATTTCCTCAAACTTCTTGATTGATATCTTATCCATTCTCCCACTGCCTCAGCTTTTGGTATTAGTAATTGTACCTGCAGCTAAAGGCCCGGTTCCATTGAAGACGAAGAACGTCGTGAAGATTGCAGTTCTTTTGCAATACATTCCGAGGCTTTTTCGAATTTATCCACTATACAGAGAAGTAACCAGAACTTCTGGAATACTGACAGAAACAGCCTGGAGTGGAGCTGCCTTCAATCTCCTTATTTATATGCAAGCTAGTCATGTAGTTGGTGCCATTTGGTATTTGTTATCAATAGAACAACAAGCCAAATGTTGGCTTGATGCATGCAAAGACAATAAGGACTGTATTGGCGACGTTTTGTACTGTGGAGATCATAGTAAAAAAATATATCCGTTTATAGAAAAGTATTGCCCTCCTAAAGAGTCTGAGGATGACAAGACCTTCAACTTTGGGATGTATCTTGAAGCCCTTAAGTTTCAGTTAACCGACACGACTAGTTTTCGTCGCAAATTCTTCTATTCCTTCTGGTGGGCTCTGCGAAATGTCGGCTCTAGTGGACAAAACCTTCAAGTAAGCAATCACATGGGGGAGGTTATTTTTGCTGTCTTCATTGCCATCCTTGGTTTGGTTTTGTTTGCCTTTCTCATAAGCAATATTCAGAAATATTTGCAGTCAGCAACTGTTAAAATAGAGCAGATGAGAATTAACCGAAGAGACGCCGAGCATTGGATGGCACATCGTATGCTCCCGGAGGACTTGAGGCAGCGTATTAGACGATACGATCAATACAAATGGCAGCTAAACAGGGGAGTTAGGGAAGAGGAACTCATTAATAACCTTCCTAAAGACCTTAGGAGAGACATCAAACGCCATCTTTGCTTGGCCCTTCTCAAGAAAGTGCCACTTTTTAGCAGCATGAATAAGCAACTGCTAGACTCGGTGTGCGAATATCTCAAGCCTGTGTTATTCACAGAGAAGAGCTTCATTCTTCAAGAGGGTGACCAAATTGATGTGATGCTATTTATCATGAAAGGAAATCTAGCTGCCATTACTACTAATGGTTGGAAAAACGACCCTTGGTCGGTCACTCTTAAGGCTGGCGATTTCTGCGGTGAAGAGCTAGTACAATGGGCAATGGATCCCACCTCTACTTCTCTTCCCATTTCAACCAGAAAAGTTAAATCTCTAACTGAAGTTGAAGCCTTTGCTCTAAAGGCTAATGAGCTGAAATCTGTAACTAGTCAGTTCCACTTCCAGCGCCTCAATAGCAAGCAATTTCAACTCTCAGTGAGGTTCTACTCTCATCAATGGAAAGTTTGGGCAGCCTATAAGATACAAGAAGCTTGGCATGATTACCGTGAAAGAAAGAAGAGAGGGGGTGGAAATGGCAGGTTTCAAGATGCATTGGCTGAAACAGTTGGCGCCTCGGCGAGCTTCGGCGCCACTCTTTATGCATCCATATTCATATCCCATCTACTGCAAGCCGTGCAGCGAGATCAACACCATCAAACTACCCAACTCACTCGAGTGATGACGCTACCGCCGCCTCCAAAGCCAGACAATGAGCAAGACAGGCCAAACTTCACCATTTTGAATCTTTAG 2142 42.48 MSKFMGSQIPKSLRFGQPTYDFHDKYGGYQNSRLSPRSILECIQRSFSSASESFRRTVMNLGFKNSGDQSVKKPKFWKKILDPQKPFLQQWNKIFVLSSVVAVAVDPLFFYIPVFDKEHRCLTMDRQLMIIASVLRSFIDLFYLLHMIFEFRTGFLPPSLPVFGSGELSKDPAAIAKRYISSNFLIDILSILPLPQLLVLVIVPAAKGPVPLKTKNVVKIAVLLQYIPRLFRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYLLSIEQQAKCWLDACKDNKDCIGDVLYCGDHSKKIYPFIEKYCPPKESEDDKTFNFGMYLEALKFQLTDTTSFRRKFFYSFWWALRNVGSSGQNLQVSNHMGEVIFAVFIAILGLVLFAFLISNIQKYLQSATVKIEQMRINRRDAEHWMAHRMLPEDLRQRIRRYDQYKWQLNRGVREEELINNLPKDLRRDIKRHLCLALLKKVPLFSSMNKQLLDSVCEYLKPVLFTEKSFILQEGDQIDVMLFIMKGNLAAITTNGWKNDPWSVTLKAGDFCGEELVQWAMDPTSTSLPISTRKVKSLTEVEAFALKANELKSVTSQFHFQRLNSKQFQLSVRFYSHQWKVWAAYKIQEAWHDYRERKKRGGGNGRFQDALAETVGASASFGATLYASIFISHLLQAVQRDQHHQTTQLTRVMTLPPPPKPDNEQDRPNFTILNL 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1112196 1115655 - Lag0020659.1 Lac7g0142 613043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0142 713 Gene3D - 93 406 - -
Lac7g0142 713 MobiDBLite consensus disorder prediction 690 713 - -
Lac7g0142 713 Pfam Ion transport protein 95 407 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac7g0142 713 SUPERFAMILY Voltage-gated potassium channels 82 404 - -
Lac7g0142 713 SMART cnmp_10 482 605 IPR000595 -
Lac7g0142 713 Gene3D Jelly Rolls 480 597 IPR014710 -
Lac7g0142 713 FunFam Cyclic nucleotide-gated ion channel 1 409 473 - -
Lac7g0142 713 Gene3D Helix hairpin bin 408 473 - -
Lac7g0142 713 ProSiteProfiles cAMP/cGMP binding motif profile. 482 566 IPR000595 -
Lac7g0142 713 SUPERFAMILY cAMP-binding domain-like 412 597 IPR018490 -
Lac7g0142 713 CDD CAP_ED 482 613 IPR000595 -
Lac7g0142 713 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 68 674 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g0142 Lac-Chr7:1112196 Lac7g0145 Lac-Chr7:1133298 3.40E-204 dispersed
Lac7g0142 Lac-Chr7:1112196 Lac7g0143 Lac-Chr7:1120462 3.60E-262 tandem
Lac2g0648 Lac-Chr2:4867663 Lac7g0142 Lac-Chr7:1112196 3.00E-07 transposed
Lac5g3020 Lac-Chr5:48096509 Lac7g0142 Lac-Chr7:1112196 2.40E-39 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0142 K05391 - csv:101206492 1092.03