Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0175 ATGGGGATTAGTGAAGAGGCAAAGGCTGTGAAGTCTGAAAAACCGTCTTCACCATCGCAGGATCAGAACAATGGGTCGAATTCAGCCAGTATTCATGTATTTCCTGATTGGGCAGCCATGCAGGCATATTATGGTCCTAGAGTTGCAGTTCCACCGTACTACAACTCTGCTGTGGCTTCAGGTCATGCTCCTCACCCTTATATGTGGGGCCCACCACAGATGATTCCTCCATATGGCACTCCTTATGCAGCAATCTATTCTCATGGAGGTGTTTATGCACATCCTGCAGTTTCTATGGGACCACACTCACATGGCCCTGGTGTTCCCTCATCACCTGCTGCTGCTGCTACTCCTTTGAGCATTGAAACACCTTCTAAGGTGTCTGGAAATAGTAGTCAAGGTTTGATGAAGAAACTGAAAGGTTTTGATGGCCTGGCAATGTCTATAGGCAATGTGAGCACTGAGAGTGCTGATGGGGGAGTTGAGCACGGACCATCAGAGAGTATGGAAACTGAAGGTTCCAGTGATGGAAGTGATGGAACTACTCCTGGGGCAAATCAAACCAAAAGGAAAAGAAGCCGTGAGGGAACACCTACCACTGGTAAGGATGCAAAAATTGAGACACAGGCAAGTCCAGTTAGTGCTGCTGAAATGAATGAAGGCTCTAACAAGTTATTGGGCTCAACCAAAACAGCTGATGCGACTGGAAAACTTGGATCTGCGAATTCACCTGGAATGTCTACAGCATTGGAACTGAGGAATCCTTCTAGTCTAAACACCATGACAGGTCCAACTGGCGTTCCGCCTTGTTCAGTATTGCCTTCTGAAGTCTGGCTACAGAATGAAAAAGAGCTAAAACGGGAAAGGAGGAAACAGTCAAATAGAGAATCAGCTAGGAGGTCAAGGTTGAGGAAGCAGGCTGAGACTGAAGAATTAGCTCGTAAAGTCGATTCACTGACTGCAGAAAATGTCGCTATTAGATCTGAAATAAGTAGATTGTCAGAGAATTCCGAGAAGCTTAAGCAGGAAAACGCTACATTGATGGAGAAGCTTAAAAACGCTCAATCAGGACGAACAGAAGCATTAGACATGAATGAAAAGAGGATGCAACAACCTGTAAGCACAGAAATCAAAGGACCTGTGAATAAAAGCATTAAGGAAGAGAGTAACATCTGCAAGAAAAACTCGAGTTCGGGTGCAAAGCTGCGTCAACTCTTGGACACGAGTCCGAGGGCAGACGCTGTGGCTGCCAGCTAA 1257 45.98 MGISEEAKAVKSEKPSSPSQDQNNGSNSASIHVFPDWAAMQAYYGPRVAVPPYYNSAVASGHAPHPYMWGPPQMIPPYGTPYAAIYSHGGVYAHPAVSMGPHSHGPGVPSSPAAAATPLSIETPSKVSGNSSQGLMKKLKGFDGLAMSIGNVSTESADGGVEHGPSESMETEGSSDGSDGTTPGANQTKRKRSREGTPTTGKDAKIETQASPVSAAEMNEGSNKLLGSTKTADATGKLGSANSPGMSTALELRNPSSLNTMTGPTGVPPCSVLPSEVWLQNEKELKRERRKQSNRESARRSRLRKQAETEELARKVDSLTAENVAIRSEISRLSENSEKLKQENATLMEKLKNAQSGRTEALDMNEKRMQQPVSTEIKGPVNKSIKEESNICKKNSSSGAKLRQLLDTSPRADAVAAS 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1404184 1407667 + Lag0020692.1 Lac7g0175 613076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0175 418 MobiDBLite consensus disorder prediction 168 187 - -
Lac7g0175 418 SUPERFAMILY Leucine zipper domain 285 342 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac7g0175 418 MobiDBLite consensus disorder prediction 202 266 - -
Lac7g0175 418 Pfam bZIP transcription factor 282 344 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac7g0175 418 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 284 347 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac7g0175 418 MobiDBLite consensus disorder prediction 280 313 - -
Lac7g0175 418 Coils Coil 302 357 - -
Lac7g0175 418 CDD bZIP_plant_GBF1 287 335 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac7g0175 418 MobiDBLite consensus disorder prediction 363 382 - -
Lac7g0175 418 PANTHER G-BOX-BINDING FACTOR 3-RELATED 13 374 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(InterPro)|GO:0043565(PANTHER)
Lac7g0175 418 FunFam G-box binding factor 3 285 340 - -
Lac7g0175 418 SMART brlzneu 282 346 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac7g0175 418 Pfam Disordered region downstream of MFMR 133 262 - -
Lac7g0175 418 MobiDBLite consensus disorder prediction 388 418 - -
Lac7g0175 418 MobiDBLite consensus disorder prediction 1 30 - -
Lac7g0175 418 MobiDBLite consensus disorder prediction 153 313 - -
Lac7g0175 418 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 289 304 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac7g0175 418 Gene3D - 285 339 - -
Lac7g0175 418 MobiDBLite consensus disorder prediction 13 30 - -
Lac7g0175 418 Pfam G-box binding protein MFMR 1 97 IPR012900 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2892 Lac-Chr1:49833100 Lac7g0175 Lac-Chr7:1404184 4.30E-25 dispersed
Lac7g0175 Lac-Chr7:1404184 Lac5g0179 Lac-Chr5:1506080 3.00E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24115 PF16596 MFMR_assoc 2.10E-17 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0175 K09060 - csv:101213720 689.493