Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0201 ATGAAAATGGAAGTTGATTGGGATCTTCACGCCGTCGTCAGAGGCTACTCCGCCGTGTCTTCCGCCGCTTCCACCGCCGTCACAGCCGCCGTTCCCTCTTCTGACTTCTACTCTGTTCCTTCCATTTCCAATAACTCTATCCCTCTTGCTTTTGGTAGAGATCCAACGAACCAAACAAACCATTTATTCTCTCTTCAAGATCCATTTCAAGGACCCAATTGTAATTCCACTGAGGAATTGCATGAGCTTTTCAAACCCTTTTTTCACAAATCTCAACAGCCCTCTCCGCCGCCGTCTGCTCCGCCGCTTCTTTCTTCTCCGGCGGGTAAAATTCTGACCCATCAGAAACAGCAGCAGAACACCCATCTCCCCAAACAGCTCCATTCTTCCCCTGTTTCTGCCCCAAGATCCAAACGCCGGAAGAATCAGTTGAAGAAAGTTTGTCAAGTTCCGGCGGAGTCTCTGTCTTCGGACATTTGGGCTTGGCGAAAATATGGCCAAAAACCGATCAAAGGATCTCCATATCCAAGGGGATATTACAGATGTAGCAGTTCCAAGGGTTGCATGGCCCGAAAACAAGTCGAGAGGAACAGATCCGACCCCGGAATGTTCATAGTCACGTACACGGCGGAGCACAACCACCCGGCGCCGACTCACCGGAATTCCCTCGCCGGCTCCACCCGTCAAAAGCCCATCACGCCGACGCCCGCCGCCGCAGAACCCGGATCCGGAAAACCCGACCCGAAACAGCCCGGTTGCTCGTCGGAAGACCAAAGTACGATCACGGAGAGCAAAGAGGAAAAAGAGGAATTATTGGCCGAAGATGAAGAAGACGACGACCTGGGGGTCTCCGATTTGATCGTCAACGACGATTTCTATGTGGGTTTTGAAGAACTCGACAGTCCAATCGCCGACGACTGCTTTTCCGACCAGTTTCCGGCGAATTTCGAGCTTCCATGGCTGTTCAACAATGCCGCCGCCGCCGCCAGCAGCATTTAA 999 52.35 MKMEVDWDLHAVVRGYSAVSSAASTAVTAAVPSSDFYSVPSISNNSIPLAFGRDPTNQTNHLFSLQDPFQGPNCNSTEELHELFKPFFHKSQQPSPPPSAPPLLSSPAGKILTHQKQQQNTHLPKQLHSSPVSAPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPITPTPAAAEPGSGKPDPKQPGCSSEDQSTITESKEEKEELLAEDEEDDDLGVSDLIVNDDFYVGFEELDSPIADDCFSDQFPANFELPWLFNNAAAAASSI 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1573823 1575028 - Lag0020718.1 Lac7g0201 613102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0201 332 MobiDBLite consensus disorder prediction 114 149 - -
Lac7g0201 332 ProSiteProfiles WRKY domain profile. 151 217 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac7g0201 332 Pfam WRKY DNA -binding domain 158 215 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac7g0201 332 MobiDBLite consensus disorder prediction 114 133 - -
Lac7g0201 332 SUPERFAMILY WRKY DNA-binding domain 154 217 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac7g0201 332 MobiDBLite consensus disorder prediction 214 233 - -
Lac7g0201 332 Gene3D WRKY domain 140 210 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac7g0201 332 MobiDBLite consensus disorder prediction 269 284 - -
Lac7g0201 332 FunFam WRKY transcription factor 22 140 210 - -
Lac7g0201 332 SMART WRKY_cls 156 216 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac7g0201 332 MobiDBLite consensus disorder prediction 211 284 - -
Lac7g0201 332 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 7 271 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
Lac7g0201 332 MobiDBLite consensus disorder prediction 88 107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g0201 Lac-Chr7:1573823 Lac9g1320 Lac-Chr9:30464887 1.10E-24 dispersed
Lac10g1260 Lac-Chr10:11067848 Lac7g0201 Lac-Chr7:1573823 6.60E-38 transposed
Lac11g0079 Lac-Chr11:698579 Lac7g0201 Lac-Chr7:1573823 5.40E-43 transposed
Lac1g3622 Lac-Chr1:55313147 Lac7g0201 Lac-Chr7:1573823 6.30E-37 transposed
Lac5g2175 Lac-Chr5:40326805 Lac7g0201 Lac-Chr7:1573823 9.40E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24118 PF03106 WRKY 4.40E-25 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0201 K13425 - csv:101217082 461.07