Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0215 ATGGCAAGGCTGTTCATTCTGAAGTCGATTTATAGTTCATCCAGCACTTTTTTGAAGCTGCCCTCATTTCAGTCTTACAAGTCTTACACAAAGATTCCCGAGTACATTGACCGGGTTCTCAGACCAAGTGCTGTTGTAAATAAAAAATACTATGAAGATGAATCTCACAGCTTGAAGAACACTCCACGTACTCCACGTACTGGTTTACTAAGAACGGCCTCTGTATGTCCTTTTTATATCCTCGGTTATGGTACACATAGCATTGGTAAATTTTTGCCGACATCGTCAGTGAAATTTTGGAACACTATCCCTCTTACGCCACTCTGCCATTTGTCAAATCCTCGATTATATTCATCTGCTTCTAGCAGGAAAGTGGATGTGGATGTAACTGGAGATGTTCCAGCAGCTTCTTCCGGTGTTGAGGCGGATATCAGTAATCCCTCTGATCTTGGAAGGGACTGGCTTGAAAGAGTTAAGGATGTCTGGCAAAGTGCTGTAGATGCAACATCTTTTACTGGGCAAAAGGCTAGAGAAATATCTGATGAATTGTCTCCTCATGTAGATAAGCTATTTGATTCACATCCATATCTAAAAAATGTAATAGTTCCTGCAAGTATGACCTTAACTGCTACTCTTTTGGCTTGGGTGGTAATGCCTAGGCTTTTGAGAAGATTCCATAAGTATTCAATGCGAGGTCCTGTTGCGATACTGTCTGGGAGCATACCTGTCGAAGAAATTCCTTATGAGAAAAGTTTTTGGGGTGCCTTAGAGGATCCTTTGCGATATCTTGTCACATTTTTTGCATTTTCTCAAATTGGTACGATGGTTGCACCAACCGCCGTGGCATCAGAGTTTGTTACACAGGCGTGCAGAGGGGCTGTCATTCTTTCCTTTGTCTGGTTTATTTATCGCTGGAAAACAAATGTGTTATCTCGAGCTTTAGCCTCCCAGACTTTTGCAGGGCTTGATCGGGAAAGGTTACTTACACTAGACAAGGTTTCATCTGTTGGCCTTTTTGCAATTGGATTAATAGCTTTGGCCGAGGCATCTGGGGTGGCTGTTCAATCTATGTTAACGGTTGGTGGCATTGGAGGAGTCGCCACTGCTTTTGCTGCTAGGGATATACTTGGGAATATTTTCAGTGGCTTAACAATGCAGTTTTCACAACCCTTCTCACTCGGAGATACGATTAAGGCTGGTGCTATTGAAGGTCAAGTTGTGGAAATGGGACTCATGACAACATCATTATTAAGTGCTGAAAAATTTCCAATGGTCGTTCCAAATTCTCTGTTTTCTAGCCAGGCAATTGTAAATAAGTCGCGGGCGCAGTGTCGTGCAATCACCAAGAAAATCCCTTTGCAAGTGAATGATCTTAGTACGATTTCTCAAATATCAGATAATATTAAGAGTATGCTTAGATCTCACCCTAAAGTGTTCTTGGGCAAGGAGGCTCCTTATTGCTTCATCTCTCGAGTTGAAAGTACATATACAGAATTGACAATTGGTTGCAACCTTAAAAAGATGGGCAAAGAAGAACTTTTTTCTACCGAACAAGATATTCTCCTCCAATCTGTACAGATCATTAAGGAAAATGGTGCAACCTTAGGCAGCACCATGTCAGATTGGACAAACAAGTGA 1638 41.76 MARLFILKSIYSSSSTFLKLPSFQSYKSYTKIPEYIDRVLRPSAVVNKKYYEDESHSLKNTPRTPRTGLLRTASVCPFYILGYGTHSIGKFLPTSSVKFWNTIPLTPLCHLSNPRLYSSASSRKVDVDVTGDVPAASSGVEADISNPSDLGRDWLERVKDVWQSAVDATSFTGQKAREISDELSPHVDKLFDSHPYLKNVIVPASMTLTATLLAWVVMPRLLRRFHKYSMRGPVAILSGSIPVEEIPYEKSFWGALEDPLRYLVTFFAFSQIGTMVAPTAVASEFVTQACRGAVILSFVWFIYRWKTNVLSRALASQTFAGLDRERLLTLDKVSSVGLFAIGLIALAEASGVAVQSMLTVGGIGGVATAFAARDILGNIFSGLTMQFSQPFSLGDTIKAGAIEGQVVEMGLMTTSLLSAEKFPMVVPNSLFSSQAIVNKSRAQCRAITKKIPLQVNDLSTISQISDNIKSMLRSHPKVFLGKEAPYCFISRVESTYTELTIGCNLKKMGKEELFSTEQDILLQSVQIIKENGATLGSTMSDWTNK 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1705407 1709012 - Lag0020732.1 Lac7g0215 613116

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0215 545 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 290 373 IPR011014 GO:0016020(InterPro)
Lac7g0215 545 SUPERFAMILY Sm-like ribonucleoproteins 374 439 IPR010920 -
Lac7g0215 545 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 167 541 - -
Lac7g0215 545 Gene3D - 285 388 - -
Lac7g0215 545 Gene3D - 390 438 IPR023408 -
Lac7g0215 545 Pfam Mechanosensitive ion channel, beta-domain 374 441 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0215 K22047 - - csv:101220483 829.706
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g0215 Lac-Chr7:1705407 Lac7g0218 Lac-Chr7:1726105 1.40E-61 dispersed
Lac7g0215 Lac-Chr7:1705407 Lac7g0217 Lac-Chr7:1723272 3.70E-110 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac7g0215 . 153 543 Mechanosensitive Ion Channel Family AT4G00290 66.8 1.6e-152 537.0
Lac7g0217 . 16 269 Mechanosensitive Ion Channel Family AT4G00290 63.0 2.8e-88 323.6
Lac5g1819 . 66 716 Mechanosensitive Ion Channel Family AT5G10490 59.8 1.7e-197 686.8
Lac6g1003 . 9 710 Mechanosensitive Ion Channel Family AT5G10490 53.9 2.2e-189 659.8
Lac6g1003 . 9 501 Mechanosensitive Ion Channel Family AT1G58200 68.4 6.8e-194 674.9
Lac5g1819 . 32 684 Mechanosensitive Ion Channel Family AT1G58200 52.5 1.0e-173 607.8
Lac9g1858 . 47 935 Mechanosensitive Ion Channel Family AT1G53470 56.0 3.5e-267 918.7
Lac9g1858 . 48 930 Mechanosensitive Ion Channel Family AT3G14810 54.0 4.4e-251 865.1
Lac9g1858 . 50 935 Mechanosensitive Ion Channel Family AT1G78610 60.5 4.7e-293 1004.6
Lac4g1220 . 62 923 Mechanosensitive Ion Channel Family AT1G78610 53.7 1.0e-242 837.4
Lac2g0114 . 88 629 Mechanosensitive Ion Channel Family AT1G78610 51.1 2.2e-149 527.3
Lac9g1858 . 226 931 Mechanosensitive Ion Channel Family AT2G17000 61.5 1.1e-238 823.9
Lac4g1220 . 272 926 Mechanosensitive Ion Channel Family AT2G17000 55.8 2.2e-202 703.4
Lac9g1858 . 1 674 Mechanosensitive Ion Channel Family AT2G17010 51.0 1.8e-162 570.5
Lac2g0488 . 69 722 Mechanosensitive Ion Channel Family AT5G19520 52.6 7.2e-181 631.7
Lac3g1066 . 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.8 1.4e-200 697.2
Lac2g0488 . 64 722 Mechanosensitive Ion Channel Family AT5G12080 55.9 2.1e-196 683.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008844 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 33