Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0215 ATGGCAAGGCTGTTCATTCTGAAGTCGATTTATAGTTCATCCAGCACTTTTTTGAAGCTGCCCTCATTTCAGTCTTACAAGTCTTACACAAAGATTCCCGAGTACATTGACCGGGTTCTCAGACCAAGTGCTGTTGTAAATAAAAAATACTATGAAGATGAATCTCACAGCTTGAAGAACACTCCACGTACTCCACGTACTGGTTTACTAAGAACGGCCTCTGTATGTCCTTTTTATATCCTCGGTTATGGTACACATAGCATTGGTAAATTTTTGCCGACATCGTCAGTGAAATTTTGGAACACTATCCCTCTTACGCCACTCTGCCATTTGTCAAATCCTCGATTATATTCATCTGCTTCTAGCAGGAAAGTGGATGTGGATGTAACTGGAGATGTTCCAGCAGCTTCTTCCGGTGTTGAGGCGGATATCAGTAATCCCTCTGATCTTGGAAGGGACTGGCTTGAAAGAGTTAAGGATGTCTGGCAAAGTGCTGTAGATGCAACATCTTTTACTGGGCAAAAGGCTAGAGAAATATCTGATGAATTGTCTCCTCATGTAGATAAGCTATTTGATTCACATCCATATCTAAAAAATGTAATAGTTCCTGCAAGTATGACCTTAACTGCTACTCTTTTGGCTTGGGTGGTAATGCCTAGGCTTTTGAGAAGATTCCATAAGTATTCAATGCGAGGTCCTGTTGCGATACTGTCTGGGAGCATACCTGTCGAAGAAATTCCTTATGAGAAAAGTTTTTGGGGTGCCTTAGAGGATCCTTTGCGATATCTTGTCACATTTTTTGCATTTTCTCAAATTGGTACGATGGTTGCACCAACCGCCGTGGCATCAGAGTTTGTTACACAGGCGTGCAGAGGGGCTGTCATTCTTTCCTTTGTCTGGTTTATTTATCGCTGGAAAACAAATGTGTTATCTCGAGCTTTAGCCTCCCAGACTTTTGCAGGGCTTGATCGGGAAAGGTTACTTACACTAGACAAGGTTTCATCTGTTGGCCTTTTTGCAATTGGATTAATAGCTTTGGCCGAGGCATCTGGGGTGGCTGTTCAATCTATGTTAACGGTTGGTGGCATTGGAGGAGTCGCCACTGCTTTTGCTGCTAGGGATATACTTGGGAATATTTTCAGTGGCTTAACAATGCAGTTTTCACAACCCTTCTCACTCGGAGATACGATTAAGGCTGGTGCTATTGAAGGTCAAGTTGTGGAAATGGGACTCATGACAACATCATTATTAAGTGCTGAAAAATTTCCAATGGTCGTTCCAAATTCTCTGTTTTCTAGCCAGGCAATTGTAAATAAGTCGCGGGCGCAGTGTCGTGCAATCACCAAGAAAATCCCTTTGCAAGTGAATGATCTTAGTACGATTTCTCAAATATCAGATAATATTAAGAGTATGCTTAGATCTCACCCTAAAGTGTTCTTGGGCAAGGAGGCTCCTTATTGCTTCATCTCTCGAGTTGAAAGTACATATACAGAATTGACAATTGGTTGCAACCTTAAAAAGATGGGCAAAGAAGAACTTTTTTCTACCGAACAAGATATTCTCCTCCAATCTGTACAGATCATTAAGGAAAATGGTGCAACCTTAGGCAGCACCATGTCAGATTGGACAAACAAGTGA 1638 41.76 MARLFILKSIYSSSSTFLKLPSFQSYKSYTKIPEYIDRVLRPSAVVNKKYYEDESHSLKNTPRTPRTGLLRTASVCPFYILGYGTHSIGKFLPTSSVKFWNTIPLTPLCHLSNPRLYSSASSRKVDVDVTGDVPAASSGVEADISNPSDLGRDWLERVKDVWQSAVDATSFTGQKAREISDELSPHVDKLFDSHPYLKNVIVPASMTLTATLLAWVVMPRLLRRFHKYSMRGPVAILSGSIPVEEIPYEKSFWGALEDPLRYLVTFFAFSQIGTMVAPTAVASEFVTQACRGAVILSFVWFIYRWKTNVLSRALASQTFAGLDRERLLTLDKVSSVGLFAIGLIALAEASGVAVQSMLTVGGIGGVATAFAARDILGNIFSGLTMQFSQPFSLGDTIKAGAIEGQVVEMGLMTTSLLSAEKFPMVVPNSLFSSQAIVNKSRAQCRAITKKIPLQVNDLSTISQISDNIKSMLRSHPKVFLGKEAPYCFISRVESTYTELTIGCNLKKMGKEELFSTEQDILLQSVQIIKENGATLGSTMSDWTNK 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1705407 1709012 - Lag0020732.1 Lac7g0215 613116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0215 545 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 290 373 IPR011014 GO:0016020(InterPro)
Lac7g0215 545 SUPERFAMILY Sm-like ribonucleoproteins 374 439 IPR010920 -
Lac7g0215 545 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 167 541 - -
Lac7g0215 545 Gene3D - 285 388 - -
Lac7g0215 545 Gene3D - 390 438 IPR023408 -
Lac7g0215 545 Pfam Mechanosensitive ion channel, beta-domain 374 441 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g0215 Lac-Chr7:1705407 Lac7g0218 Lac-Chr7:1726105 1.40E-61 dispersed
Lac7g0215 Lac-Chr7:1705407 Lac7g0217 Lac-Chr7:1723272 3.70E-110 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0215 K22047 - csv:101220483 829.706