Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac7g0217 | ATGGTACTAAGAAGACTATTTGGCTCGCAATCAACCGAGCTTTCTTCTGTGGTGGCATCAGAGTTTGTTACACAGGCGTGCAGAGGGGCAGTCATTCTTTCCCTTGTCTGGTTTATTTATCGCTGGAAAAGAAATGTGTTATCTCGAGCTTTAGCCTCCCAGACTTTTGCAGGGCTTGATCGGAAATGGTTACTTACACTAGACAAGGTTTCATCTGTTGGCCTTTTTGCAATTGGATTAATGGGTTTGGCCGAGGCATCTGGGGTGGCTGTTCAATCTATGTTAACTGTTGGTGGCATTGGAGGAGTGACCATTGCTTTTGCTGCGAGGGATATACGTGGGAATATTTTAAGTGGCTTAAGAATGCGGTTTTCACAACACTTCTCACTTGGAGATACGATTAAGGCTGGTGCTATTGAAGGTAAAGTTGTGGAAATGGGACTCATGACAACATCATTATTAAGTGCTCAACAATTTTCAATCGTTGTTCCAAATTCTCTCCTTTATGGCCAGGAAATTATAAATGTGTCGCGGGCACAGTGTCATGCAATCACCAAGGAAATCCGTTTGCAAGTGGATGATCTTAGGATCATTTCTCAGATAACAGATAATATTAAGAGTATGCTAAGATCTCACCCTCAAGCCTTCTTAGGCAAGGAGGCTCCTTATTGCTTTCTCTCTCATGTTGAGAGTAGATATGCAAGGTTGACAATTGGTTGCAACCTTAGAAAGATGGGTGAAGAAGAATTTTTCTCTACCCAGCAAGATATTCTTCTTCAGTCGATAAAGATCATCAAGGAAAATGGTCATGTCAGATTGGACGAACCAGTGATGATGAACAAGAGTGATTTATGCATGAAAGGGACTGAAGAGTAA | 876 | 41.78 | MVLRRLFGSQSTELSSVVASEFVTQACRGAVILSLVWFIYRWKRNVLSRALASQTFAGLDRKWLLTLDKVSSVGLFAIGLMGLAEASGVAVQSMLTVGGIGGVTIAFAARDIRGNILSGLRMRFSQHFSLGDTIKAGAIEGKVVEMGLMTTSLLSAQQFSIVVPNSLLYGQEIINVSRAQCHAITKEIRLQVDDLRIISQITDNIKSMLRSHPQAFLGKEAPYCFLSHVESRYARLTIGCNLRKMGEEEFFSTQQDILLQSIKIIKENGHVRLDEPVMMNKSDLCMKGTEE | 291 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 1723272 | 1725895 | - | Lag0020734.1 | Lac7g0217 | 613118 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac7g0217 | 291 | SUPERFAMILY | Mechanosensitive channel protein MscS (YggB), transmembrane region | 27 | 110 | IPR011014 | GO:0016020(InterPro) | |
| Lac7g0217 | 291 | PANTHER | YNAI-RELATED MECHANOSENSITIVE ION CHANNEL | 17 | 276 | - | - | |
| Lac7g0217 | 291 | Gene3D | - | 128 | 175 | IPR023408 | - | |
| Lac7g0217 | 291 | Pfam | Mechanosensitive ion channel, beta-domain | 114 | 178 | IPR006685 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac7g0217 | 291 | SUPERFAMILY | Sm-like ribonucleoproteins | 112 | 177 | IPR010920 | - | |
| Lac7g0217 | 291 | Gene3D | - | 22 | 124 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac7g0215 | Lac-Chr7:1705407 | Lac7g0217 | Lac-Chr7:1723272 | 3.70E-110 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac7g0217 | K22047 | - | csv:101220483 | 384.03 |