Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac7g0226 | ATGGGAGGCTGCTGCTGTTCGACCCGAAAATCTCACGTGAATGGAACTCCAGCATATTACTATTGCCCGCTGGCTATGGAGGAGCGTGAATCATCCGAAATTCATAGTGGCTCGGCCTCCATGCTCCTCAATGCAGGACATGATTTGGGCCTGGATTCGTCGATACCGAACACATACCGAGCCCCTCCCACACCTCTCCCATATGATGTGGTTTTGAGATGTCCACAACCGAAAGATCTTAACTCTATTAAAGAAACAATTTGTGGATGTAGTTTCAGAACTTCCTCAGCAGTGAAAAATGTTGGGGAACTAGATAGTAAGTTCCAAGACAGCCCTTTGCTTGGAGGCCCTCCACGAAAATTGGAACATTCAAAGTCGAAAGGCAATAATACTCCAATTCCGATCGCCGAAGAAGAGGATGTCTGTCCCATTTGTCTTGAAGAGTATGATTCAACACATCCAGAAATTATCACAAAATGCAAGCACCACTTTCACCTCGCTTGCCTTCTCGAGTGGACCGAAAGAAGCGATGCCTGTCCTATCTGCGACAAGCTTGAGCTCAGTTCACCACTGGTGGATGGTGCTTTTCCTCGTTCAGTTACAGTCAGTCGTTTCGATACGTCGGGGAAGAACAAAGCTCTGATACAACAGATGCTTCCTCATGTTGTTGGATCTTCATGA | 681 | 46.7 | MGGCCCSTRKSHVNGTPAYYYCPLAMEERESSEIHSGSASMLLNAGHDLGLDSSIPNTYRAPPTPLPYDVVLRCPQPKDLNSIKETICGCSFRTSSAVKNVGELDSKFQDSPLLGGPPRKLEHSKSKGNNTPIPIAEEEDVCPICLEEYDSTHPEIITKCKHHFHLACLLEWTERSDACPICDKLELSSPLVDGAFPRSVTVSRFDTSGKNKALIQQMLPHVVGSS | 226 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 1783529 | 1784824 | + | Lag0020743.1 | Lac7g0226 | 613127 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac7g0226 | 226 | ProSiteProfiles | Zinc finger RING-type profile. | 142 | 183 | IPR001841 | - | |
| Lac7g0226 | 226 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 187 | - | GO:0004842(PANTHER)|GO:0005829(PANTHER) | |
| Lac7g0226 | 226 | SMART | ring_2 | 142 | 182 | IPR001841 | - | |
| Lac7g0226 | 226 | Pfam | Ring finger domain | 141 | 182 | IPR001841 | - | |
| Lac7g0226 | 226 | SUPERFAMILY | RING/U-box | 136 | 185 | - | - | |
| Lac7g0226 | 226 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 188 | IPR013083 | - | |
| Lac7g0226 | 226 | MobiDBLite | consensus disorder prediction | 108 | 132 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac12g2317 | Lac-Chr12:40294311 | Lac7g0226 | Lac-Chr7:1783529 | 3.10E-10 | dispersed | |
| Lac11g2071 | Lac-Chr11:36575171 | Lac7g0226 | Lac-Chr7:1783529 | 2.60E-25 | wgd |
Pathway information