Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0234 ATGGCGGTTGTGAGTCCTATACAAGCAACTACACCTCGAGCTGGTCCGACTAATTATGCTGAAGCTTCACCAATTATGATAAGCTCAAGCAGAGAGATTGTGGAAGAGCCAGTGGGAGTTATCAGTGAAGATACAATTTGGGTTGCCGTTGGGAAAGATGTGAAAGAGTGCTTATCAGTTTTGAGGTATGCACTAAAATCCTCCCGTGGGAAGAAGATTTGCCTCCTCCACGTTCATATCCCCGCACAGATGATTCCATTAATGGGTACCAGATTTCCAGCGAACTCATTGGAGAAAGAGGAAGTAAAAGCATATCATGAGTTTGAGAAGCAAAATTTGCCGAGGGTCATAAATGAGTATATTCTGTACTGTCTTCAAGAAGGGGTTCATGCTGAGAGATTATGTGCTGAAGCTGAGAGTATCGAGAAGGGAATAGTTGATATGATTTCCCAACATGGGATTAAAAAGCTTGTTATGGGAGCAGCTGTAGACAAGTGTTATTCAAGGAAAATGGTAGATCTGAAGTCTAAGAAAGCCATTTATGTGCGTTCACAGGCACCGGCTTTCTGTCACATTGATTTTATTTGCAAGGGGAATCTCATCTGCACCAGGGAGGGTCGATCGGATGGAGCTCAAGTAGAAGCCTCCATCTCATCGCCACAAACAAGTCCAAATGCTGAAGCCTCAGAGATTGCCCACCAGCGATCTCAGTCACTGCCACTGGGGCAGGTTAACAGCAGGGAAGTTGGAAGTCCATCTTCAGATTTACGCCCTAGAGGGAGATCATTGCTTCTTGACCATTTTAGAGGAAGCACGCTAGACCCTTCTTCTTCTCCATATATTATGAGTGGGGTTCGCACTGCAAGAAACTTGGATGTTAATGAGGCTTTTGATGAATGGGGTTTATTGGCAAGAAGAAGTCCTTCTGAAAGGTCAGACAATTCCTTACGCTCTCCTCGTGGTGTGATTGACATGGCTCCTTCTCCACTTTCCAGGGTTGAGTTGTGTGAAAATGGGCTAGAGGATGGGAAAACCAGTGATTGCCTTTACAATCAATGTGAACGGGTGATGATGGAGGCTGCAAATGCGAGGCGTGATGCATTTTTAGAGGCAATTGCGCGTAGAAAATCTGAGAAAGAGACCATTAACGCTCTACGCAGGGTTAAAGCTGCAGAAGAGTTATATGCTGAAGAACTGAAACAAAGGAAGGAGGTTGAACAAGAACTAGCAAGGGAAAGGGCAAAACTTGAAAGCATTAAGAAGCAACTAAATGAAGAGACGGAAGAGCTCCGGATAGCCCAAGATCAGAAGGCAAGCCTCGAGCGAGAACTTTTAGAATCTGATCTAACAGCTAAGGAGTTGGAGCAGAAGATCCTTTCTGCTGTTGAATTGTTACAGAATTACAAAAGAGAGCGAGAGGAGTTGCAGAGTCAACGGGACAATGCACTTATAGAAGCAGAGGAGCTTAGAAGAAATCAATCTGCTGGCGGATACCTTCCGCAGTTCTATACCGAGTTCCCATTTCGGGAGATTGAGGAAGCAACTAGAAACTTCGATCCCTCCCTAAAGATTGGAGAAGGGGGATATGGAAGTATATATAAAGGTTTCTTGCGTCATACTATGGTGGCTATAAAAATCCTACATTCCGATAGCTCTCAAGGCCCCTCTGAATTTCAACAAGAGGTTAATGTTTTGAGTAAGACGAGACATCCCAATCTTGTCACGCTCATTGGAGCCTGTCCAGAAGCTTGGGTTCTCATCTACGAATACCTCTGTAATGGTAGCCTGGAAGATAGACTCAACTGCAAGGATAATACTCCGCCTTTATCTTGGCAAACACGAATACGCATTGCCACCGAGTTATGCTCGGCCCTTATGTTTCTTCACTCCAGTAAGCCCCACAGCATCATTCATGGAGACTTGAAACCTGCAAATATACTACTTGATACGAACTTTGTATGCAAGCTTGGCGACTTTGGTATTTGTCGCTTATTGTCTCGGGATGAAATACTAAACAACAATGAAACACTTTTTTGGAGAACTGACAACCCCAAGGGAACTTTTGCTTACATGGATCCTGAATTCCTTTCATCTGGAGAGCTAACAACAAAGTCAGATGTCTATTCATTTGGGATAATACTGTTGCGGTTATTGACTGGTAGATCTGCAATTGGGATAACAAAGGAAGTGCAATATGCAATGGGAAATGGAAAGTTAAAATCCATTTTGGATCCTTTAGCAGGAGATTGGCCATTCGTGCAGGCTGAACAGCTCGCTCGATTGGCATTGAGGTGTTGCGATATGAACCGAAAGAGTCGCCCCGATCTCATTACTGATGTCTGGAGAGTGCTTGGACCAATGAGGGCTTCTTGTGGAGGCTTGTTGTCCGTCCAGCTGGGTTCTGCAGAACACTTGCAACCTCCCCCTTATTTTATCTGTCCCATCTTTCAGGAAGTCATGCAGGATCCACATGTGGCTGCAGATGGTTTTACATATGAAGCAGAGGCCGTGAGAGGATGGCTAGACAGTGGACATGATACTTCACCAATGACGAATCTTAGGCTCGAGCACCGCAACCTCGTCCCAAACCGTGCTCTTCGTTCTGCTATCCAGGAGTGGCTCCAACGGAACTGA 2634 44.99 MAVVSPIQATTPRAGPTNYAEASPIMISSSREIVEEPVGVISEDTIWVAVGKDVKECLSVLRYALKSSRGKKICLLHVHIPAQMIPLMGTRFPANSLEKEEVKAYHEFEKQNLPRVINEYILYCLQEGVHAERLCAEAESIEKGIVDMISQHGIKKLVMGAAVDKCYSRKMVDLKSKKAIYVRSQAPAFCHIDFICKGNLICTREGRSDGAQVEASISSPQTSPNAEASEIAHQRSQSLPLGQVNSREVGSPSSDLRPRGRSLLLDHFRGSTLDPSSSPYIMSGVRTARNLDVNEAFDEWGLLARRSPSERSDNSLRSPRGVIDMAPSPLSRVELCENGLEDGKTSDCLYNQCERVMMEAANARRDAFLEAIARRKSEKETINALRRVKAAEELYAEELKQRKEVEQELARERAKLESIKKQLNEETEELRIAQDQKASLERELLESDLTAKELEQKILSAVELLQNYKREREELQSQRDNALIEAEELRRNQSAGGYLPQFYTEFPFREIEEATRNFDPSLKIGEGGYGSIYKGFLRHTMVAIKILHSDSSQGPSEFQQEVNVLSKTRHPNLVTLIGACPEAWVLIYEYLCNGSLEDRLNCKDNTPPLSWQTRIRIATELCSALMFLHSSKPHSIIHGDLKPANILLDTNFVCKLGDFGICRLLSRDEILNNNETLFWRTDNPKGTFAYMDPEFLSSGELTTKSDVYSFGIILLRLLTGRSAIGITKEVQYAMGNGKLKSILDPLAGDWPFVQAEQLARLALRCCDMNRKSRPDLITDVWRVLGPMRASCGGLLSVQLGSAEHLQPPPYFICPIFQEVMQDPHVAADGFTYEAEAVRGWLDSGHDTSPMTNLRLEHRNLVPNRALRSAIQEWLQRN 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1834159 1839105 - Lag0020751.1 Lac7g0234 613135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0234 877 FunFam receptor-like protein kinase FERONIA 481 590 - -
Lac7g0234 877 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac7g0234 877 PANTHER OS02G0152300 PROTEIN 47 871 IPR051348 -
Lac7g0234 877 Gene3D Phosphorylase Kinase; domain 1 499 590 - -
Lac7g0234 877 Pfam U-box domain 808 877 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac7g0234 877 ProSitePatterns Protein kinases ATP-binding region signature. 524 545 IPR017441 GO:0005524(InterPro)
Lac7g0234 877 Coils Coil 382 492 - -
Lac7g0234 877 Gene3D Transferase(Phosphotransferase) domain 1 591 790 - -
Lac7g0234 877 SMART serkin_6 518 784 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac7g0234 877 MobiDBLite consensus disorder prediction 212 252 - -
Lac7g0234 877 Pfam Protein kinase domain 523 775 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac7g0234 877 ProSiteProfiles Protein kinase domain profile. 518 811 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac7g0234 877 CDD STK_N 45 198 - -
Lac7g0234 877 SUPERFAMILY Protein kinase-like (PK-like) 496 776 IPR011009 -
Lac7g0234 877 CDD RING-Ubox_WDSUB1-like 808 863 - -
Lac7g0234 877 SMART Ubox_2 810 873 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac7g0234 877 SUPERFAMILY RING/U-box 802 877 - -
Lac7g0234 877 MobiDBLite consensus disorder prediction 212 260 - -
Lac7g0234 877 ProSiteProfiles U-box domain profile. 806 877 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac7g0234 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 806 877 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1721 Lac-Chr12:33040793 Lac7g0234 Lac-Chr7:1834159 2.20E-231 dispersed
Lac6g3081 Lac-Chr6:48360680 Lac7g0234 Lac-Chr7:1834159 1.00E-94 dispersed
Lac7g0234 Lac-Chr7:1834159 Lac9g2476 Lac-Chr9:43612497 2.40E-135 dispersed
Lac1g2774 Lac-Chr1:48855125 Lac7g0234 Lac-Chr7:1834159 3.30E-68 transposed
Lac5g2945 Lac-Chr5:47487029 Lac7g0234 Lac-Chr7:1834159 4.60E-156 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86308 PF00069 Pkinase 1.80E-42 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0234 - - - 0.0