Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac7g0288 | ATGGTGAGAGGAAAAACTCAGATGAGGAGAATCGAAAACGCGACGAGTCGGCAAGTGACGTTTTCTAAGCGGCGCAATGGGCTGCTGAAGAAGGCCTTTGAGCTCTCGGTTCTCTGCGAAGCTGAAGTCGCTCTTATCATTTTCTCTTCCAGAGGAAAGCTTTACGAATTTGCAAGCTCAAGCATGCAGGCCACAGTGGGGCGATTTCTAAGGCATACAAGGGAAACCAGTCATCTTGAACGTCCCTTAGCTCCTCACCACAATTTACAAGCTGTTCAGCATGAGGCTACAAGTTTGTTGAAGGAGATAGAGTCACTTGAAGTTTCAAAGAGGAAATTGTTGGGAGAAGGTTTGGGATCAAGCTCTTATGAAGAACTTCAACAAATAGAACAACAGCTAGAAAGGAGCTTATCCCATGTTAGAGCTAGAAAGCACGAGGTTTACAAGGAACAGATTGAAAAACTAAAAGAAAAGGAGAAGTATTTGGAAGCTGAAAATGCAAAGCTTTGTAAAAAGGAGTACTTAGTTCAACTCGAGCCTCAACAATCACCGATTCAACTAGTAGAGACTTCACCTAATCTAGAAAGTAGCTCGATTTCCGATGTTGAAACGGAGTTGTTCATCGGACTGCCCAAGTCGAGATCAAAGTGA | 651 | 43.47 | MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSSRGKLYEFASSSMQATVGRFLRHTRETSHLERPLAPHHNLQAVQHEATSLLKEIESLEVSKRKLLGEGLGSSSYEELQQIEQQLERSLSHVRARKHEVYKEQIEKLKEKEKYLEAENAKLCKKEYLVQLEPQQSPIQLVETSPNLESSSISDVETELFIGLPKSRSK | 216 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2240055 | 2244754 | + | Lag0020805.1 | Lac7g0288 | 613189 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac7g0288 | 216 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac7g0288 | 216 | Coils | Coil | 123 | 143 | - | - | |
Lac7g0288 | 216 | Coils | Coil | 145 | 172 | - | - | |
Lac7g0288 | 216 | Gene3D | - | 14 | 92 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac7g0288 | 216 | SUPERFAMILY | SRF-like | 3 | 75 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac7g0288 | 216 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac7g0288 | 216 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac7g0288 | 216 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac7g0288 | 216 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac7g0288 | 216 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac7g0288 | 216 | Pfam | K-box region | 87 | 172 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Lac7g0288 | 216 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 186 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Lac7g0288 | 216 | Coils | Coil | 89 | 109 | - | - | |
Lac7g0288 | 216 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac7g0288 | 216 | ProSiteProfiles | K-box domain profile. | 89 | 184 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Lac7g0288 | 216 | FunFam | Agamous-like MADS-box protein AGL13 | 13 | 78 | - | - | |
Lac7g0288 | 216 | CDD | MADS_MEF2_like | 3 | 73 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g2156 | Lac-Chr11:37612216 | Lac7g0288 | Lac-Chr7:2240055 | 3.60E-48 | dispersed | |
Lac12g1859 | Lac-Chr12:35070934 | Lac7g0288 | Lac-Chr7:2240055 | 1.00E-24 | dispersed | |
Lac5g2657 | Lac-Chr5:45040827 | Lac7g0288 | Lac-Chr7:2240055 | 2.40E-32 | dispersed | |
Lac5g2881 | Lac-Chr5:47066980 | Lac7g0288 | Lac-Chr7:2240055 | 1.60E-41 | dispersed | |
Lac6g0809 | Lac-Chr6:6972126 | Lac7g0288 | Lac-Chr7:2240055 | 3.10E-29 | dispersed | |
Lac6g0810 | Lac-Chr6:6986829 | Lac7g0288 | Lac-Chr7:2240055 | 5.50E-28 | dispersed | |
Lac6g1007 | Lac-Chr6:9213162 | Lac7g0288 | Lac-Chr7:2240055 | 2.80E-21 | dispersed | |
Lac7g0288 | Lac-Chr7:2240055 | Lac9g2247 | Lac-Chr9:41849203 | 7.80E-19 | dispersed | |
Lac12g1858 | Lac-Chr12:35061191 | Lac7g0288 | Lac-Chr7:2240055 | 9.20E-28 | transposed | |
Lac12g1856 | Lac-Chr12:35022565 | Lac7g0288 | Lac-Chr7:2240055 | 5.20E-33 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24127 | PF01486 | K-box | 7.20E-26 | No_clan | Lac | TF |
Pathway information
