Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0288 ATGGTGAGAGGAAAAACTCAGATGAGGAGAATCGAAAACGCGACGAGTCGGCAAGTGACGTTTTCTAAGCGGCGCAATGGGCTGCTGAAGAAGGCCTTTGAGCTCTCGGTTCTCTGCGAAGCTGAAGTCGCTCTTATCATTTTCTCTTCCAGAGGAAAGCTTTACGAATTTGCAAGCTCAAGCATGCAGGCCACAGTGGGGCGATTTCTAAGGCATACAAGGGAAACCAGTCATCTTGAACGTCCCTTAGCTCCTCACCACAATTTACAAGCTGTTCAGCATGAGGCTACAAGTTTGTTGAAGGAGATAGAGTCACTTGAAGTTTCAAAGAGGAAATTGTTGGGAGAAGGTTTGGGATCAAGCTCTTATGAAGAACTTCAACAAATAGAACAACAGCTAGAAAGGAGCTTATCCCATGTTAGAGCTAGAAAGCACGAGGTTTACAAGGAACAGATTGAAAAACTAAAAGAAAAGGAGAAGTATTTGGAAGCTGAAAATGCAAAGCTTTGTAAAAAGGAGTACTTAGTTCAACTCGAGCCTCAACAATCACCGATTCAACTAGTAGAGACTTCACCTAATCTAGAAAGTAGCTCGATTTCCGATGTTGAAACGGAGTTGTTCATCGGACTGCCCAAGTCGAGATCAAAGTGA 651 43.47 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSSRGKLYEFASSSMQATVGRFLRHTRETSHLERPLAPHHNLQAVQHEATSLLKEIESLEVSKRKLLGEGLGSSSYEELQQIEQQLERSLSHVRARKHEVYKEQIEKLKEKEKYLEAENAKLCKKEYLVQLEPQQSPIQLVETSPNLESSSISDVETELFIGLPKSRSK 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2240055 2244754 + Lag0020805.1 Lac7g0288 613189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0288 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac7g0288 216 Coils Coil 123 143 - -
Lac7g0288 216 Coils Coil 145 172 - -
Lac7g0288 216 Gene3D - 14 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac7g0288 216 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac7g0288 216 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac7g0288 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac7g0288 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac7g0288 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac7g0288 216 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac7g0288 216 Pfam K-box region 87 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac7g0288 216 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 186 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac7g0288 216 Coils Coil 89 109 - -
Lac7g0288 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac7g0288 216 ProSiteProfiles K-box domain profile. 89 184 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac7g0288 216 FunFam Agamous-like MADS-box protein AGL13 13 78 - -
Lac7g0288 216 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2156 Lac-Chr11:37612216 Lac7g0288 Lac-Chr7:2240055 3.60E-48 dispersed
Lac12g1859 Lac-Chr12:35070934 Lac7g0288 Lac-Chr7:2240055 1.00E-24 dispersed
Lac5g2657 Lac-Chr5:45040827 Lac7g0288 Lac-Chr7:2240055 2.40E-32 dispersed
Lac5g2881 Lac-Chr5:47066980 Lac7g0288 Lac-Chr7:2240055 1.60E-41 dispersed
Lac6g0809 Lac-Chr6:6972126 Lac7g0288 Lac-Chr7:2240055 3.10E-29 dispersed
Lac6g0810 Lac-Chr6:6986829 Lac7g0288 Lac-Chr7:2240055 5.50E-28 dispersed
Lac6g1007 Lac-Chr6:9213162 Lac7g0288 Lac-Chr7:2240055 2.80E-21 dispersed
Lac7g0288 Lac-Chr7:2240055 Lac9g2247 Lac-Chr9:41849203 7.80E-19 dispersed
Lac12g1858 Lac-Chr12:35061191 Lac7g0288 Lac-Chr7:2240055 9.20E-28 transposed
Lac12g1856 Lac-Chr12:35022565 Lac7g0288 Lac-Chr7:2240055 5.20E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24127 PF01486 K-box 7.20E-26 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0288 - - - 0.0