Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0310 ATGTCTGTTACTTTGCACACAAATCTCGGAGACATCAAGTGCGAGATCTTCTGCGATGAAGTCCCGAAGGCTGCCGAGAATTTTTTGGCACTATGTGCTACTGGTTACTATGATGGAACCATATTCCACCGAAATATCAAAGGTTTCATGATACAAGGTGGAGATCCAACAGGCACGGGAAAAGGGGGAACCAGCATATGGGGCAAAAAGTTCAATGACGAGATAAGAGAGTCGCTCAAGCACAATGCAAGAGGGATATTATCAATGGCTAATAGTGGAGCAAATACAAATGGGAGCCAATTTTTTATTACTTATGCAAAGCAGCCACATCTGAATGGATTATACACCGTGTTCGGTAGAGTGATTCATGGGTTTGAAGTACTTGATATCATGGAAAAGACTCAAACTGGAACGGGAGATCGTCCTCTTGCGGAGATCAGGCTCAATCGGGTGACGATACATGCTAATCCTCTTGCAGGCTAA 483 43.89 MSVTLHTNLGDIKCEIFCDEVPKAAENFLALCATGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILSMANSGANTNGSQFFITYAKQPHLNGLYTVFGRVIHGFEVLDIMEKTQTGTGDRPLAEIRLNRVTIHANPLAG 160
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 2379499 2382037 + Lag0020827.1 Lac7g0310 613211
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0310 160 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 150 IPR044666 GO:0000413(PANTHER)|GO:0003755(PANTHER)|GO:0071013(PANTHER)
Lac7g0310 160 PIRSF Peptidylpro_ismrse 1 157 IPR024936 GO:0003755(InterPro)
Lac7g0310 160 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 37 54 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Lac7g0310 160 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 6 153 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lac7g0310 160 SUPERFAMILY Cyclophilin-like 1 157 IPR029000 -
Lac7g0310 160 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 152 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lac7g0310 160 FunFam Peptidyl-prolyl cis-trans isomerase 1 160 - -
Lac7g0310 160 CDD Cyclophilin_PPIL3_like 1 153 - -
Lac7g0310 160 Gene3D - 1 160 IPR029000 -
Lac7g0310 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lac7g0310 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 112 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lac7g0310 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 128 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lac7g0310 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lac7g0310 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 85 100 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1898 Lac-Chr10:24842512 Lac7g0310 Lac-Chr7:2379499 1.70E-42 dispersed
Lac10g2836 Lac-Chr10:42913641 Lac7g0310 Lac-Chr7:2379499 1.00E-40 dispersed
Lac1g2663 Lac-Chr1:47909174 Lac7g0310 Lac-Chr7:2379499 1.20E-50 dispersed
Lac2g0472 Lac-Chr2:3457954 Lac7g0310 Lac-Chr7:2379499 5.00E-29 dispersed
Lac7g0310 Lac-Chr7:2379499 Lac8g2155 Lac-Chr8:39923200 1.10E-28 dispersed
Lac7g0310 Lac-Chr7:2379499 Lac4g1612 Lac-Chr4:34791250 2.40E-33 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0310 K12734 - csv:101211474 321.242