Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac7g0310 | ATGTCTGTTACTTTGCACACAAATCTCGGAGACATCAAGTGCGAGATCTTCTGCGATGAAGTCCCGAAGGCTGCCGAGAATTTTTTGGCACTATGTGCTACTGGTTACTATGATGGAACCATATTCCACCGAAATATCAAAGGTTTCATGATACAAGGTGGAGATCCAACAGGCACGGGAAAAGGGGGAACCAGCATATGGGGCAAAAAGTTCAATGACGAGATAAGAGAGTCGCTCAAGCACAATGCAAGAGGGATATTATCAATGGCTAATAGTGGAGCAAATACAAATGGGAGCCAATTTTTTATTACTTATGCAAAGCAGCCACATCTGAATGGATTATACACCGTGTTCGGTAGAGTGATTCATGGGTTTGAAGTACTTGATATCATGGAAAAGACTCAAACTGGAACGGGAGATCGTCCTCTTGCGGAGATCAGGCTCAATCGGGTGACGATACATGCTAATCCTCTTGCAGGCTAA | 483 | 43.89 | MSVTLHTNLGDIKCEIFCDEVPKAAENFLALCATGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILSMANSGANTNGSQFFITYAKQPHLNGLYTVFGRVIHGFEVLDIMEKTQTGTGDRPLAEIRLNRVTIHANPLAG | 160 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 2379499 | 2382037 | + | Lag0020827.1 | Lac7g0310 | 613211 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac7g0310 | 160 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED | 2 | 150 | IPR044666 | GO:0000413(PANTHER)|GO:0003755(PANTHER)|GO:0071013(PANTHER) | |
| Lac7g0310 | 160 | PIRSF | Peptidylpro_ismrse | 1 | 157 | IPR024936 | GO:0003755(InterPro) | |
| Lac7g0310 | 160 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 37 | 54 | IPR020892 | GO:0003755(InterPro)|GO:0006457(InterPro) | |
| Lac7g0310 | 160 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 6 | 153 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Lac7g0310 | 160 | SUPERFAMILY | Cyclophilin-like | 1 | 157 | IPR029000 | - | |
| Lac7g0310 | 160 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 3 | 152 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Lac7g0310 | 160 | FunFam | Peptidyl-prolyl cis-trans isomerase | 1 | 160 | - | - | |
| Lac7g0310 | 160 | CDD | Cyclophilin_PPIL3_like | 1 | 153 | - | - | |
| Lac7g0310 | 160 | Gene3D | - | 1 | 160 | IPR029000 | - | |
| Lac7g0310 | 160 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 42 | 54 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Lac7g0310 | 160 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 100 | 112 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Lac7g0310 | 160 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 113 | 128 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Lac7g0310 | 160 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 16 | 31 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Lac7g0310 | 160 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 85 | 100 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g1898 | Lac-Chr10:24842512 | Lac7g0310 | Lac-Chr7:2379499 | 1.70E-42 | dispersed | |
| Lac10g2836 | Lac-Chr10:42913641 | Lac7g0310 | Lac-Chr7:2379499 | 1.00E-40 | dispersed | |
| Lac1g2663 | Lac-Chr1:47909174 | Lac7g0310 | Lac-Chr7:2379499 | 1.20E-50 | dispersed | |
| Lac2g0472 | Lac-Chr2:3457954 | Lac7g0310 | Lac-Chr7:2379499 | 5.00E-29 | dispersed | |
| Lac7g0310 | Lac-Chr7:2379499 | Lac8g2155 | Lac-Chr8:39923200 | 1.10E-28 | dispersed | |
| Lac7g0310 | Lac-Chr7:2379499 | Lac4g1612 | Lac-Chr4:34791250 | 2.40E-33 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac7g0310 | K12734 | - | csv:101211474 | 321.242 |