Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac7g0316 | ATGGATCGAGCCACCGCCGCCCACGGCCGTCCACTTCCGCCGCCGTTCATTTCAAGAGACCTCCATCTCAATCCCCACCACCATTTCCTCCACCAAAATTCCGATCAACATCACAACGGCAATGGTAGCTCCGGCGGTGGCGCCGCCGTGGAACTCAAAGAGCTGAGCGGCGGCGCAGCCGCAGACGGCGAGGTCTCGAGACGACCACGTGGCCGCCCTGCCGGGTCGAAGAACAAGCCGAAGCCGCCGATGATAATCACACGTGACAGCGCCAATGCTCTCCGGTGCCACGTCATCGAAATCGCCAACGCCAACGACGTGATCGAAACCCTCACGATTTTCGCACGTCAGCGCCAGCGTGGCATTTGCATTCTGACCGGCGCCGGAGCGGTCACCAATGTCACCCTCAAACAGCCGGCCTCCGACGCCGGAGCGGTGATCGCTCTGCCGGGGAGATTCGAGATTCTTTCGCTGTCGGGGTCGTTTCTACCGCCGCCAGCGCCTCCGGTGGCGTCCGGGCTGACCGTGTATTTGTCGGGCGGGCAGGGGCAGGTGGTCGGAGGAAGCGTGGTGGGCCCACTTTTGAGTTCGGGGCCGGTGGTGATTACGGCGGCTTCGTTTGGAAACGCGGCGTACGAGAGGCTGCCGGTGGAGGACGATGACGTGGCGACGGCGGCGGCGGCGGAGGCCGGGAGTAGTCCGATTCGATCGCCGGAAACCGCCTTGCAACAGCAACAATTTTTGCCGGAACTTCATGGGATGGCGCCGAATCTAATGAACACGTGTCAATTGCCGACGGAACCCTACTGGGGCACAGGTCGTAGTACTCCGCCATTTTAG | 840 | 62.5 | MDRATAAHGRPLPPPFISRDLHLNPHHHFLHQNSDQHHNGNGSSGGGAAVELKELSGGAAADGEVSRRPRGRPAGSKNKPKPPMIITRDSANALRCHVIEIANANDVIETLTIFARQRQRGICILTGAGAVTNVTLKQPASDAGAVIALPGRFEILSLSGSFLPPPAPPVASGLTVYLSGGQGQVVGGSVVGPLLSSGPVVITAASFGNAAYERLPVEDDDVATAAAAEAGSSPIRSPETALQQQQFLPELHGMAPNLMNTCQLPTEPYWGTGRSTPPF | 279 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 2435494 | 2436333 | - | Lag0020833.1 | Lac7g0316 | 613217 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac7g0316 | 279 | MobiDBLite | consensus disorder prediction | 1 | 85 | - | - | |
| Lac7g0316 | 279 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 91 | 222 | - | - | |
| Lac7g0316 | 279 | FunFam | AT-hook motif nuclear-localized protein | 94 | 222 | - | - | |
| Lac7g0316 | 279 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 44 | 234 | IPR014476 | GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER) | |
| Lac7g0316 | 279 | CDD | DUF296 | 95 | 178 | IPR005175 | - | |
| Lac7g0316 | 279 | Gene3D | - | 94 | 226 | - | - | |
| Lac7g0316 | 279 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 95 | 207 | IPR005175 | - | |
| Lac7g0316 | 279 | ProSiteProfiles | PPC domain profile profile. | 91 | 228 | IPR005175 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac6g1014 | Lac-Chr6:9263173 | Lac7g0316 | Lac-Chr7:2435494 | 1.00E-45 | dispersed | |
| Lac7g0316 | Lac-Chr7:2435494 | Lac7g0365 | Lac-Chr7:2817085 | 3.80E-58 | dispersed | |
| Lac7g0316 | Lac-Chr7:2435494 | Lac7g0322 | Lac-Chr7:2496090 | 4.20E-17 | proximal | |
| Lac12g1878 | Lac-Chr12:35278159 | Lac7g0316 | Lac-Chr7:2435494 | 6.90E-64 | wgd |
Pathway information