Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac7g0322 | ATGGAAGAGAGAGAAGCCATAAGTTCAGGAGTAACAGTGATAGGAGCCGAAGCTCCGTCGGCTTATCACGTGGCTCCGAGAACCGATAACCCGCCGCCGGCCAGCGGCGGCGGTTCGCCCACCGTCGCCGCCTCTCCGGTGAGCGTGGGGTTGCCCGGAAGTGGAACCGCAGGGAAAAAGAAACGAGGCAGACCTAGAAAATACGGCCCGGATGGAACAGTCACCATGGCATTGTCGCCATTGCCGCTTTCTTCCTCAGCTCCGGCGGCCGGCGGCTTTTCGATCACCAAGCGCGGGAAGGGCCGGCTCGGCGGCTCAGAGTTCAAGCATCACAAGAAAATGGGGATGGAATATATAGGTGAATGGAATGCGTGTTCTGTCGGTACAAATTTCATGCCTCATATCATCACGGTCAATGCTGGCGAGGATGTCACTATGAAGATCATATCATTTTCCCAACAAGGTCCTCGAGCAATCTGTATTCTTTCTGCAAATGGTGTAATTTCAAATGTCACACTTCGGCAACCCGATTCTTCAGGCGGTACTTTAACATATGAGGGTCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGAAAATCAAGGAACGAGAAGCAGGTCGGGTGGGATGAGCGTCTCCTTGGCAAGCCCCGACGGTCGTGTTGTTGGGGGAGGGGTAGCTGGTTTACTCATAGCTGCAAGTCCTGTACAGGTTGTGGTAGGGAGTTTTCTACCAACTAGCCAACAGGAGCAGAAAGTAAAGAAACAGAAACCCGAGTCGGTACCAGCTGCAGCCCCTGTTGCAGTCCCGAGCACGACACCAGCCACCACCGTGCCAACTTCCAATGCCGATACAGACGACAGTTTAAATGGCAACGGTCTGCAAAATCCCAGTTCCCTAAAACCAACTACATTCTCTCCTGCTGCTTTCCAGAGAGACAATTGGGGTGCCAACGCTGCCGTGCATTCCTTGCAGGAGCCGAGAAATACCGCTACCGACATCAACATATCGCTGCCAGGCTAA | 1032 | 53.0 | MEEREAISSGVTVIGAEAPSAYHVAPRTDNPPPASGGGSPTVAASPVSVGLPGSGTAGKKKRGRPRKYGPDGTVTMALSPLPLSSSAPAAGGFSITKRGKGRLGGSEFKHHKKMGMEYIGEWNACSVGTNFMPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRSGGMSVSLASPDGRVVGGGVAGLLIAASPVQVVVGSFLPTSQQEQKVKKQKPESVPAAAPVAVPSTTPATTVPTSNADTDDSLNGNGLQNPSSLKPTTFSPAAFQRDNWGANAAVHSLQEPRNTATDINISLPG | 343 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 2496090 | 2500197 | + | Lag0020839.1 | Lac7g0322 | 613223 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac7g0322 | 343 | ProSiteProfiles | PPC domain profile profile. | 128 | 268 | IPR005175 | - | |
| Lac7g0322 | 343 | Gene3D | - | 133 | 262 | - | - | |
| Lac7g0322 | 343 | CDD | DUF296 | 133 | 246 | IPR005175 | - | |
| Lac7g0322 | 343 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 133 | 246 | IPR005175 | - | |
| Lac7g0322 | 343 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 11 | 293 | IPR039605 | GO:0003680(InterPro) | |
| Lac7g0322 | 343 | MobiDBLite | consensus disorder prediction | 273 | 309 | - | - | |
| Lac7g0322 | 343 | FunFam | AT-hook motif nuclear-localized protein 1-like | 133 | 263 | - | - | |
| Lac7g0322 | 343 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 131 | 252 | - | - | |
| Lac7g0322 | 343 | MobiDBLite | consensus disorder prediction | 250 | 309 | - | - | |
| Lac7g0322 | 343 | MobiDBLite | consensus disorder prediction | 20 | 72 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac11g2200 | Lac-Chr11:38130348 | Lac7g0322 | Lac-Chr7:2496090 | 1.90E-90 | dispersed | |
| Lac2g1826 | Lac-Chr2:18078212 | Lac7g0322 | Lac-Chr7:2496090 | 1.90E-74 | dispersed | |
| Lac5g0514 | Lac-Chr5:5834969 | Lac7g0322 | Lac-Chr7:2496090 | 2.10E-78 | dispersed | |
| Lac5g2849 | Lac-Chr5:46810279 | Lac7g0322 | Lac-Chr7:2496090 | 2.90E-71 | dispersed | |
| Lac6g0075 | Lac-Chr6:678997 | Lac7g0322 | Lac-Chr7:2496090 | 1.40E-57 | dispersed | |
| Lac6g2832 | Lac-Chr6:45956472 | Lac7g0322 | Lac-Chr7:2496090 | 6.90E-25 | dispersed | |
| Lac7g0322 | Lac-Chr7:2496090 | Lac9g2667 | Lac-Chr9:45017792 | 3.70E-31 | dispersed | |
| Lac7g0316 | Lac-Chr7:2435494 | Lac7g0322 | Lac-Chr7:2496090 | 4.20E-17 | proximal |
Pathway information