Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0342 ATGCCCTTCTCCTTCGCATCCTTCCTTCTCCTCTTCTCAGCCTTCATGGCTTCCTCTGTTTCGTCGTTCCGCGGGCCGAACCCGGTTCGGTTGGATCAGACCGGAGTTGTTGAAGCAATAAACTCGGTTCGAAACTCCATAGCCGGGATGGGTTATTTGAAACGACGACGCTTTGAACATTTGAATGTGCAGGCCGCACTCGGCGATTGCACTAGGCTCTATGAGGAGGCCGACTTGCGGCTCGCCGGGATGGTGGCTGGAGAGAATTATACGGCGGAAGATGGTCGGACGTGGCTTAGCGCCGCCGTGGCTAATCATCGGAGTTGTTTGGATGGCTTGGAAGAGGTCGGCGCTGCGGCGGTGGCGGTGGATGGGAATAACTTGACGGTGTTGCTCACCGGAGCTCTGCGTTTATACGACAAGATTGCCGCCGTGGAGGAGCGGAACGGATGGGAACGAGTAAAGAAACAGAAATTAAGGGAAAACAGAGGAATCAACTTGGCGAAATGGAATCCGGCGACGTGGAAGCCGGACTTTGTGGTGGCGAAGGACGGCTCCGGCACCCACACAACCATCAACGGCGCGGTGGCGGCTCTGGCGAGGAGCGGCCGGAGACGGCGGTCGGAGAGAGTGGTTATATACGTGAAAGCCGGAGTTTACAAAGAGAATGTGGAAATCGGGATGCAGTTGAAGAACGTCATGGTTGTCGGCGACGGCGCAGACAAAACTATCGTCACCGGCAGCCGCAACGTGCCGGACGGCGCCACCACTTATAACTCAGCTACATTTGGCGTTTCCGGCGACGGGTTTTGGGCAAGAGACATAACATTCGAGAACACCGCCGGACCGGAAAAGCAACAGGCGGTGGCGCTACGGCTAAATTCCGACCTCGCCGTCGTATACCGCTGCACAATCAAAGGCTATCAGGACACCCTCTTCCTGCACTCCCTCCGGCAATTCTACCGCGACTGCAAAATCTACGGTACCGTCGATTTCATCTTCGGCAACGCCGCCGCCGTCCTTCAAAACTGCGACATCTTCGTCCGACGGCCGATCCGCCACCAGGCCAACATGATCACCGCCCAAGGCCGCGACGATCCGGCCGAGCCCACTGGAATATCGATCCTGAACTCCAGAGTCCGGTCGGCGCCGGATTTCGCCGCCGTCAAGGCCGATTTCAAGACCTACCTCGGCCGGCCGTGGAAGCGATTCTCGAGGACGGTGGTTATGGCGACGGATTTGGACGGATTGATCGATCCGAGAGGGTGGGGAGAATGGAAGGGAGATTTTGCGATTTCGACTCTGTTTTATGCAGAGTTTAAGAACATTGGCGGTGGCTCTTCGACGAGATTTAGGGTTAATTGGCCGGGATTTCATGTCCTCCGTAGCGCGGTGGAGGCGCGGCGTTTCACGGTGGGCGAGTTTCTCCACGGCGGCGCTTGGATTCCAGCCACTGGCGTGCCCTTCGAGGCGGGAGTTTGA 1482 57.49 MPFSFASFLLLFSAFMASSVSSFRGPNPVRLDQTGVVEAINSVRNSIAGMGYLKRRRFEHLNVQAALGDCTRLYEEADLRLAGMVAGENYTAEDGRTWLSAAVANHRSCLDGLEEVGAAAVAVDGNNLTVLLTGALRLYDKIAAVEERNGWERVKKQKLRENRGINLAKWNPATWKPDFVVAKDGSGTHTTINGAVAALARSGRRRRSERVVIYVKAGVYKENVEIGMQLKNVMVVGDGADKTIVTGSRNVPDGATTYNSATFGVSGDGFWARDITFENTAGPEKQQAVALRLNSDLAVVYRCTIKGYQDTLFLHSLRQFYRDCKIYGTVDFIFGNAAAVLQNCDIFVRRPIRHQANMITAQGRDDPAEPTGISILNSRVRSAPDFAAVKADFKTYLGRPWKRFSRTVVMATDLDGLIDPRGWGEWKGDFAISTLFYAEFKNIGGGSSTRFRVNWPGFHVLRSAVEARRFTVGEFLHGGAWIPATGVPFEAGV 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2637606 2640765 - Lag0020859.1 Lac7g0342 613243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0342 493 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 123 IPR035513 -
Lac7g0342 493 Pfam Plant invertase/pectin methylesterase inhibitor 25 117 IPR006501 GO:0004857(InterPro)
Lac7g0342 493 SUPERFAMILY Pectin lyase-like 174 491 IPR011050 -
Lac7g0342 493 FunFam Pectinesterase 172 493 - -
Lac7g0342 493 ProSitePatterns Pectinesterase signature 2. 326 335 IPR033131 -
Lac7g0342 493 PANTHER PECTINESTERASE 39 484 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lac7g0342 493 Gene3D - 172 493 IPR012334 -
Lac7g0342 493 Gene3D Invertase/pectin methylesterase inhibitor family protein 11 142 IPR035513 -
Lac7g0342 493 CDD PMEI-like_4 2 139 - -
Lac7g0342 493 Pfam Pectinesterase 178 478 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac7g0342 493 SMART PMEI_2 4 138 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g0342 Lac-Chr7:2637606 Lac8g1609 Lac-Chr8:33968880 3.30E-121 dispersed
Lac7g0342 Lac-Chr7:2637606 Lac7g0343 Lac-Chr7:2660085 8.60E-106 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0342 K01051 - csv:101217635 732.25