Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0343 ATGGCAGCCATTAGAGGCCATTATTCGACGATTCTCGTTGTTGTTGTTCTTGTTGTTCTTATTTTCCCGTCCGCCATTTTTTCTTATTCCGAAAAGGAAATAAAAAGTTGGTGTAGCCAAACACCATATCCAGCTCCATGTGAAGATTTTCTCAAAACAAAATCCACAACAAACAAGTCCCCAATCGCTACAAAATCCCATTTCCTCAAAATCCTAGTCGAAACGGCACTGGAGCGTGCCGTTTCGGCTCACAAAACCGCGCTTTCCTACGGTCCGAAGTGCCGAAACGGCCGAGAAAAATCTGCATGGACCGACTGCGTCGAGCTCTACGACCAGATCATAAAGCGGCTCAACCGGACCGCCGACCGGTGCTCTTCGGCCGACGCCCAGACCTGGCTCAGCGCCGCCCTCACCGCCCTCGATACCTGCCGGACCGGCTTCGAGGAGCTCGGCGTTTCCGGTTTCGGGTACTCCTTGACGGCTAACAATGTTTCGAAGCTGATCAGCGATGGGTTGTCGGTGAATAAGCCGGCGTCGCCGGAGGCGTTTGATCCGCCGAGCATGGAGGACGGGTTTCCGACGTGGGTTCGGCCCGGTGACCGGAAATTGCTGCAGTCCGGGGCTCCGAATGCGGATGTGGTGGTGGCGAAGGATGGGTCTGGGAATTTCAAGACGGTGAAGGAGGCGGTCGCCGCCGCGAAGGGCGGCGGGAGGTTTGTGATATATGTGAAGGCCGGGGTTTATAGTGAGAATGTTGAGATTAATGCTAAGAATGTTATGTTGGTCGGCGACGGTATCGGAAAAACCGTTATTACCGGAAGTAGAAGTGTCGGCGGCGGTTCAACCACTTTTAGATCAGCCACCGTTGCCGTTGATGGAGACGGATTCATCGCACGTGACATAACCTTCAGAAACACCGCCGGCGCTTCAAACCACCAGGCGGTGGCGCTCCGGTCCGGCTCCGACCTCTCCGTCTTCTACCGCTGCGGCTTCGAAGGCTTTCAAGACACTCTCTACGTCTACGCCGAACGCCAATTCTACAAACAATGCGACATTTACGGCACCGTCGATTTCATCTTCGGCAACGCCGCCGTCGTGATCCAAGATTGCAACATCATCGCCCGCGATCCTCCGAACAAGACCATCACTGTCACCGCCCAAGGCCGCTCGGATCCGAATCAGAACACCGGAATCTCGATCCACAATTGCAGAATCACGTCGGCCGGCGGCCTCAGCGGCGTCAAGGCCTTTTTAGGTCGGCCGTGGAGGCAGTATTCGAGAACTGTGATCATGAAATCGTCGATCGGAGGATTTATCAGTCCGGCTGGGTGGATGGAGTGGAGCGGTAATTTTGCCCTAAATACGCTGTACTACGGCGAGTATATGAATACCGGTCCGGGAGCTTCGACGGCGAATCGAGTGAAGTGGAAGGGTTATCGTGTGATTACCAGTGCGGCGGAGGCTTCGAAGTTCACCGTCGGGAATTTCATCGCCGGTGGATCGTGGTTGCCGAGCACCGGCGTGCCTTTCACATCCGGGCTGTGA 1545 55.21 MAAIRGHYSTILVVVVLVVLIFPSAIFSYSEKEIKSWCSQTPYPAPCEDFLKTKSTTNKSPIATKSHFLKILVETALERAVSAHKTALSYGPKCRNGREKSAWTDCVELYDQIIKRLNRTADRCSSADAQTWLSAALTALDTCRTGFEELGVSGFGYSLTANNVSKLISDGLSVNKPASPEAFDPPSMEDGFPTWVRPGDRKLLQSGAPNADVVVAKDGSGNFKTVKEAVAAAKGGGRFVIYVKAGVYSENVEINAKNVMLVGDGIGKTVITGSRSVGGGSTTFRSATVAVDGDGFIARDITFRNTAGASNHQAVALRSGSDLSVFYRCGFEGFQDTLYVYAERQFYKQCDIYGTVDFIFGNAAVVIQDCNIIARDPPNKTITVTAQGRSDPNQNTGISIHNCRITSAGGLSGVKAFLGRPWRQYSRTVIMKSSIGGFISPAGWMEWSGNFALNTLYYGEYMNTGPGASTANRVKWKGYRVITSAAEASKFTVGNFIAGGSWLPSTGVPFTSGL 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2660085 2664854 + Lag0020860.1 Lac7g0343 613244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0343 514 Pfam Plant invertase/pectin methylesterase inhibitor 33 173 IPR006501 GO:0004857(InterPro)
Lac7g0343 514 PANTHER PECTINESTERASE 12 505 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lac7g0343 514 FunFam Pectinesterase 206 514 - -
Lac7g0343 514 Pfam Pectinesterase 212 499 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac7g0343 514 Gene3D - 207 514 IPR012334 -
Lac7g0343 514 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 176 IPR035513 -
Lac7g0343 514 CDD PMEI-like_3 36 179 - -
Lac7g0343 514 SMART PMEI_2 29 174 IPR006501 GO:0004857(InterPro)
Lac7g0343 514 NCBIfam pectinesterase inhibitor domain 10 156 IPR006501 GO:0004857(InterPro)
Lac7g0343 514 SUPERFAMILY Pectin lyase-like 208 513 IPR011050 -
Lac7g0343 514 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 175 IPR035513 -
Lac7g0343 514 ProSitePatterns Pectinesterase signature 2. 352 361 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2829 Lac-Chr5:46668782 Lac7g0343 Lac-Chr7:2660085 1.40E-159 dispersed
Lac5g2830 Lac-Chr5:46674583 Lac7g0343 Lac-Chr7:2660085 2.10E-134 dispersed
Lac7g0343 Lac-Chr7:2660085 Lac8g1609 Lac-Chr8:33968880 3.90E-133 dispersed
Lac7g0342 Lac-Chr7:2637606 Lac7g0343 Lac-Chr7:2660085 8.60E-106 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0343 K01051 - csv:101217552 902.508