Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0460 ATGCTCTCTGGGTTTTCTCAGGAGCCGGCCGGAATGTACTCGGCCATTCCGGCGCTGCCGATGGACGGCGGCGGCCACGGCCACGGCCACGGCAAGTTTCAGGGGTCTCTCGACGGAACGAATCTTCCCGGCGACGCTTGTTTGGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGCTGGACGGCGGAGCTTCACGAGCGATTTGTCGACGCCGTCACTCAGCTCGGCGGCCCCGACAAGGCAACCCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACCCTTTATCACTTAAAATCACACCTCCAGAAATATCGGCTCGGGAAGCAATCGTTCAAGGAATCGACTGAGAACTCAAAGGATGCTTCTTGTATGGCAGAAAGTCAAGAAACAAGTTCCTCTTCGTCGCCTTCGTCGAGAATAATGACACAGGATCTGAATGACGGTTTCCAAGTAACGGAGGCTTTGCGAGTGCAAATGGAGGTTCAGAGAAGGCTGCACGAGCAGCTGGAGGTGCAGCGTCATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTACAATCGATACTCGAGCGGGCTTGTCAAGCATTGAGCGATCAGACTGCAGCGTCTGCAGGACTCGAAGCTGCTAGGGAAGAGCTCTCTGAACTGGCAATCAAAGTTTCCAATGACTCTAAAGAGATGGCACCATTGGAGACTCAAAAAGTGCTTCCCTTTTCAGAACTTGCTGCTGCTCTAGAAAACCGAAAAGCTCCTACTGTTATGGCTCGAATAGGCGATTGCTCCATGGATAGCTGCCTGACATCAGCTGGAAGCCCGGTTTCCCCGATCGGAGTAGGATCAGCCAACACAATGAAGAGACCGAGACCAGTCTTTAGTCACGGAGATTCGATGGCTCTCGAGGGCAATGCACGGCACGATGTCGAATGGATGATGAGTAATATTGGATGA 960 52.4 MLSGFSQEPAGMYSAIPALPMDGGGHGHGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCMAESQETSSSSSPSSRIMTQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLETQKVLPFSELAAALENRKAPTVMARIGDCSMDSCLTSAGSPVSPIGVGSANTMKRPRPVFSHGDSMALEGNARHDVEWMMSNIG 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3641995 3646108 - Lag0020977.1 Lac7g0460 613361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0460 319 NCBIfam myb-like DNA-binding domain, SHAQKYF class 55 110 IPR006447 GO:0003677(InterPro)
Lac7g0460 319 Pfam MYB-CC type transfactor, LHEQLE motif 153 198 IPR025756 -
Lac7g0460 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 27 278 IPR046955 GO:0003700(InterPro)
Lac7g0460 319 MobiDBLite consensus disorder prediction 115 144 - -
Lac7g0460 319 Gene3D - 54 113 - -
Lac7g0460 319 Coils Coil 210 230 - -
Lac7g0460 319 MobiDBLite consensus disorder prediction 119 144 - -
Lac7g0460 319 Pfam Myb-like DNA-binding domain 57 108 IPR001005 -
Lac7g0460 319 FunFam Myb family transcription factor 54 112 - -
Lac7g0460 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 112 IPR017930 -
Lac7g0460 319 SUPERFAMILY Homeodomain-like 55 112 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2465 Lac-Chr11:40847025 Lac7g0460 Lac-Chr7:3641995 7.40E-32 dispersed
Lac1g3111 Lac-Chr1:51537919 Lac7g0460 Lac-Chr7:3641995 2.10E-44 dispersed
Lac3g1914 Lac-Chr3:21466592 Lac7g0460 Lac-Chr7:3641995 3.80E-22 dispersed
Lac7g0460 Lac-Chr7:3641995 Lac9g2297 Lac-Chr9:42305878 4.10E-40 dispersed
Lac7g0460 Lac-Chr7:3641995 Lac6g1592 Lac-Chr6:22108782 2.10E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24135 PF00249 Myb_DNA-binding 1.90E-07 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0460 - - - 0.0