Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac7g0460 | ATGCTCTCTGGGTTTTCTCAGGAGCCGGCCGGAATGTACTCGGCCATTCCGGCGCTGCCGATGGACGGCGGCGGCCACGGCCACGGCCACGGCAAGTTTCAGGGGTCTCTCGACGGAACGAATCTTCCCGGCGACGCTTGTTTGGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGCTGGACGGCGGAGCTTCACGAGCGATTTGTCGACGCCGTCACTCAGCTCGGCGGCCCCGACAAGGCAACCCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACCCTTTATCACTTAAAATCACACCTCCAGAAATATCGGCTCGGGAAGCAATCGTTCAAGGAATCGACTGAGAACTCAAAGGATGCTTCTTGTATGGCAGAAAGTCAAGAAACAAGTTCCTCTTCGTCGCCTTCGTCGAGAATAATGACACAGGATCTGAATGACGGTTTCCAAGTAACGGAGGCTTTGCGAGTGCAAATGGAGGTTCAGAGAAGGCTGCACGAGCAGCTGGAGGTGCAGCGTCATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTACAATCGATACTCGAGCGGGCTTGTCAAGCATTGAGCGATCAGACTGCAGCGTCTGCAGGACTCGAAGCTGCTAGGGAAGAGCTCTCTGAACTGGCAATCAAAGTTTCCAATGACTCTAAAGAGATGGCACCATTGGAGACTCAAAAAGTGCTTCCCTTTTCAGAACTTGCTGCTGCTCTAGAAAACCGAAAAGCTCCTACTGTTATGGCTCGAATAGGCGATTGCTCCATGGATAGCTGCCTGACATCAGCTGGAAGCCCGGTTTCCCCGATCGGAGTAGGATCAGCCAACACAATGAAGAGACCGAGACCAGTCTTTAGTCACGGAGATTCGATGGCTCTCGAGGGCAATGCACGGCACGATGTCGAATGGATGATGAGTAATATTGGATGA | 960 | 52.4 | MLSGFSQEPAGMYSAIPALPMDGGGHGHGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCMAESQETSSSSSPSSRIMTQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLETQKVLPFSELAAALENRKAPTVMARIGDCSMDSCLTSAGSPVSPIGVGSANTMKRPRPVFSHGDSMALEGNARHDVEWMMSNIG | 319 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 3641995 | 3646108 | - | Lag0020977.1 | Lac7g0460 | 613361 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac7g0460 | 319 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 55 | 110 | IPR006447 | GO:0003677(InterPro) | |
Lac7g0460 | 319 | Pfam | MYB-CC type transfactor, LHEQLE motif | 153 | 198 | IPR025756 | - | |
Lac7g0460 | 319 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 27 | 278 | IPR046955 | GO:0003700(InterPro) | |
Lac7g0460 | 319 | MobiDBLite | consensus disorder prediction | 115 | 144 | - | - | |
Lac7g0460 | 319 | Gene3D | - | 54 | 113 | - | - | |
Lac7g0460 | 319 | Coils | Coil | 210 | 230 | - | - | |
Lac7g0460 | 319 | MobiDBLite | consensus disorder prediction | 119 | 144 | - | - | |
Lac7g0460 | 319 | Pfam | Myb-like DNA-binding domain | 57 | 108 | IPR001005 | - | |
Lac7g0460 | 319 | FunFam | Myb family transcription factor | 54 | 112 | - | - | |
Lac7g0460 | 319 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 52 | 112 | IPR017930 | - | |
Lac7g0460 | 319 | SUPERFAMILY | Homeodomain-like | 55 | 112 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g2465 | Lac-Chr11:40847025 | Lac7g0460 | Lac-Chr7:3641995 | 7.40E-32 | dispersed | |
Lac1g3111 | Lac-Chr1:51537919 | Lac7g0460 | Lac-Chr7:3641995 | 2.10E-44 | dispersed | |
Lac3g1914 | Lac-Chr3:21466592 | Lac7g0460 | Lac-Chr7:3641995 | 3.80E-22 | dispersed | |
Lac7g0460 | Lac-Chr7:3641995 | Lac9g2297 | Lac-Chr9:42305878 | 4.10E-40 | dispersed | |
Lac7g0460 | Lac-Chr7:3641995 | Lac6g1592 | Lac-Chr6:22108782 | 2.10E-36 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24135 | PF00249 | Myb_DNA-binding | 1.90E-07 | CL0123 | Lac | TF |
Pathway information
