Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0463 ATGCCTCCAAATTTCTCCGGCCACCACCACCACCACCACCACGATCTCTACAACAACCAAGACCAATTCATGGGGTCTCGCCCCCTCGAAACCTCCGCCGACAACGCCGCCGGAATCCTCACCTACTTTCCGGCCAACCCTCCGCCGCCGCCGCCGCTGCAGCCAATAACTTCTCTGGACAAGCTCAGCTTCTCGGAGGTCATGCAGTTCGCCGACTTCGGTCCGAAGCTCAGCCTCACCCGGTTCGACGAGCAGGACGAACCGGCCGGGATCGACCCGGTCTACTTCCTGAAGTTCCCGGTCCTGAACAACGAGAGGGCGGAGGAGCCGCCGCCCGGAGAGGAGGAGGAGGCGGCGGCGGAGATGGGAGGCAGAATTGCAGGGGAATTAGAAGAGGAGAATTTTAGAAATAATAATAATAATATTAATAATAATAATAATGGTAATAATAAAAGGAAGAGAGGGAGGACGGTGAAGACAAGTGAAGAAGTGGAGAGTCAAAGAATGACGCATATTGCAGTGGAGAGGAATCGAAGGAAGCAAATGAATGAGCATCTTCGGGTTTTGCGTTCTCTCATGCCTGGTTCTTACGTTCAAAGGGGAGATCAAGCTTCAATAATCGGCGGAGCAATCGAGTTCGTGAGGGAGCTGGAGCAGCTCCTCCAGTGTCTAGAATCCCAAAAACGGCGTCGTCTCTTAGGAGAGCCGCCACTGCAGGCGGCCGAGCAGCCGCCGCAGCAAGCGGCGTTTCTGGCGGCGGCGGGAGGAGGTAATTTTGGAGGTCATGAACAAAACGAGGGGCAAATGTTCGAAACGACGGCGGAGAGCAAATCGTGCCTTGCTGACGTGGAAGTGAAGGTTGTAGGGTTCGACGCTATGATAAAAATCCTTTCGAGAAGACGGCCGGGACAGCTCATCAAAGCCATAGCCGCGCTTGAAGATTTGCAGCTCAATATTCTTCATACCAATATCACCACCATTGAACAGACTGTTCTTTATTCATTCAACGTCAAGATAGCGAGCGAGTCAAGCTTCACAGCAGAAGACATAGCGAGCTCAGTTCAGCAGATATTCAGTTTTATTCATGCAAACACCGCCATGTGA 1104 52.63 MPPNFSGHHHHHHHDLYNNQDQFMGSRPLETSADNAAGILTYFPANPPPPPPLQPITSLDKLSFSEVMQFADFGPKLSLTRFDEQDEPAGIDPVYFLKFPVLNNERAEEPPPGEEEEAAAEMGGRIAGELEEENFRNNNNNINNNNNGNNKRKRGRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEPPLQAAEQPPQQAAFLAAAGGGNFGGHEQNEGQMFETTAESKSCLADVEVKVVGFDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIEQTVLYSFNVKIASESSFTAEDIASSVQQIFSFIHANTAM 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3674860 3678265 - Lag0020980.1 Lac7g0463 613364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0463 367 MobiDBLite consensus disorder prediction 134 169 - -
Lac7g0463 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 217 IPR011598 GO:0046983(InterPro)
Lac7g0463 367 ProSiteProfiles ACT domain profile. 293 367 IPR002912 -
Lac7g0463 367 CDD bHLH_AtFAMA_like 169 237 - -
Lac7g0463 367 Gene3D - 158 232 IPR036638 GO:0046983(InterPro)
Lac7g0463 367 MobiDBLite consensus disorder prediction 1 29 - -
Lac7g0463 367 MobiDBLite consensus disorder prediction 134 151 - -
Lac7g0463 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 237 IPR036638 GO:0046983(InterPro)
Lac7g0463 367 PANTHER TRANSCRIPTION FACTOR FAMA 87 360 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Lac7g0463 367 Pfam Helix-loop-helix DNA-binding domain 167 218 IPR011598 GO:0046983(InterPro)
Lac7g0463 367 FunFam Basic helix-loop-helix transcription factor 157 232 - -
Lac7g0463 367 SMART finulus 172 223 IPR011598 GO:0046983(InterPro)
Lac7g0463 367 MobiDBLite consensus disorder prediction 155 169 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g0017 Lac-Chr7:145836 Lac7g0463 Lac-Chr7:3674860 1.00E-39 dispersed
Lac7g0463 Lac-Chr7:3674860 Lac7g0786 Lac-Chr7:6273204 7.50E-38 dispersed
Lac7g0463 Lac-Chr7:3674860 Lac5g0235 Lac-Chr5:2102466 2.60E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24136 PF00010 HLH 7.40E-10 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0463 K26213 - csv:101214530 469.929