Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0490 ATGGCAATGGCGGAATCTGGAGGATGGATTCGTTTGTTTCTTCTCGTGGTGTTCATGTTGTTCTTCGTCGGAACAATTGCCAGAGTTCCCAAGGAGATTCCTGAAATTGAGAATGGGGCAACTGAGGTGTTGCAGAGCTCAAGCAACTCATCAATGGCAGTGAGGTTGGACGAGGTTGAGGCTCCCGGTAATAAGCATGCCGTTGACAACCCAGAAGAGATCGCTGCAATGGTTGACATGAGTATCCGCAATGCCACTGCGAGGAGAGAACTTGGTTTCTTCTCATGTGGAACCGGCAATCCTATTGATGACTGCTGGCGTTGCGACCCCAATTGGCAACAGAACCGCAAACGTCTGGCAGATTGTGGCATTGGCTTTGGCCGAAATGCCATCGGCGGTCGCGACGGTCGATTCTACGTCGTCACTGATTCTGGTGATGACGACCCTGTCAGCCCAAGGCCAGGCACTTTGCGCCATGCCGTCATCCAGGATGAACCTCTCTGGATTGTGTTCAAAAGAGACATGGTGATACAGCTCAAACAGGAACTGATCATGAATAGTTTCAAGACAATTGATGCTCGTGGGACCAATGTTCACATTGCTAATGGTGCTTGCCTCACAATCCAGTTTGTGACCAATGTTATTGTCCATGGTCTTAACATCCATGACTGCAAGCCCACTGGAAACGCCATGGTAAGGAGCTCTCCCAATCACGTTGGGTGGAGAACAATGGCTGATGGGGATGCCATTTCCATTTTCGGGTCAAGTCATATTTGGATCGATCACAATTCACTCTCTAATTGTGCTGATGGCCTTGTCGATGCTGTCATGGGATCCACTGCAATTACCATCACCAACAATTACTTCACCCACCACAATGAGGTAATGTTATTGGGGCACAGTGATTCCTACGTTAGAGATAAACAAATGCAAGTGACCATTGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGGCACGGATACTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCTAATCCAACCATCAACAGCCAGGGTAACAGATATGCTGCTCCGACCAACCCTTTTGCAAAAGAGGTGACCAAGAGGGTTGAGACAGCTGAATCTCAGTGGAAACACTGGAACTGGAGATCAGAGGGAGACCTATTGTTGAATGGTGCCTTTTTCACTCCATCTGGTGCAGGGGCCTCTGCAAGCTATGCCAGAGCCTCAAGTTTGGGAGCTAAATCCTCATCCATGGTTGCTTCCATAACATCCAGCGCCGGTGCGCTTAACTGCCGGAGAGGCCATCCCTGCTAG 1347 49.0 MAMAESGGWIRLFLLVVFMLFFVGTIARVPKEIPEIENGATEVLQSSSNSSMAVRLDEVEAPGNKHAVDNPEEIAAMVDMSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVSPRPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACLTIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAESQWKHWNWRSEGDLLLNGAFFTPSGAGASASYARASSLGAKSSSMVASITSSAGALNCRRGHPC 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3919748 3923701 + Lag0021007.1 Lac7g0490 613391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0490 448 Gene3D - 99 441 IPR012334 -
Lac7g0490 448 SMART amb_all 174 371 IPR002022 -
Lac7g0490 448 FunFam Pectate lyase 99 441 - -
Lac7g0490 448 SUPERFAMILY Pectin lyase-like 76 443 IPR011050 -
Lac7g0490 448 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Lac7g0490 448 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Lac7g0490 448 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Lac7g0490 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Lac7g0490 448 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Lac7g0490 448 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
Lac7g0490 448 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Lac7g0490 448 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Lac7g0490 448 Pfam Pectate lyase 185 363 IPR002022 -
Lac7g0490 448 PANTHER PECTATE LYASE 18-RELATED 20 445 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g0490 Lac-Chr7:3919748 Lac8g2540 Lac-Chr8:43165558 7.40E-173 dispersed
Lac10g0530 Lac-Chr10:4115298 Lac7g0490 Lac-Chr7:3919748 1.40E-173 transposed
Lac11g2537 Lac-Chr11:41447143 Lac7g0490 Lac-Chr7:3919748 6.70E-203 wgd
Lac12g2078 Lac-Chr12:37893849 Lac7g0490 Lac-Chr7:3919748 2.10E-212 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0490 K01728 - csv:101218188 849.351