Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0518 ATGGATTCAGGCTTCTGCTCCTCTCATCTCTCCGACCTCTTCGGCCCCAACACCACCAACGCCACCGGCGCTGCAAATTTCATCTGCGACCAACTCACCACCATCTCCAACAACTTCTCCGATACCAAAAACGCCCTCGACAACACCTACCTCCTCTTCTCCGCCTACCTCGTCTTCTCTATGCAACTCGGCTTCGCCATGCTCTGCGCCGGCTCCGTCCGCGCCAAGAACACCATGAACATCATGCTCACCAACGTCCTCGACGCCGCCGCCGGTGGCCTCTTCTACTACCTCTTCGGCTACGCCTTTGCCTTCGGTGCCCCCTCCAACGGCTTCATCGGCCGCCACAACTTCGGCCTCTCCTCCTTCCCGACCTCCACCGCCGATTACAGCGTCTTCCTCTACCAGTGGGCCTTCGCCATCGCCGCCGCCGGGATTACCAGCGGATCCATCGCCGAGCGGACTCAGTTCGTCGCCTACTTGATCTACTCCTCTGTTTTGACCGGCTTCGTTTATCCGGTCGTTTCTCATTGGTTCTGGTCCCCCGATGGTTGGGCTGGGGCTGTGAAATCCGGAGGCGGATTGTTGTTTGGATCTGGAGTGATCGACTTCGCCGGCTCCGGCGTCGTCCATATGGTTGGGGGAATTGCAGGTCTGTGGGGCGCGTTGATCGAGGGGCCGAGAATCGGTCGATACGACCACTCCGGCCGGTCGGTGGCTCTGCGAGGGCACAGCGCCTCTTTAGTCGTGCTCGGAACTTTCATGCTCTGGTTCGGATGGTACGGTTTCAATCCAGGTTCCTTCACGAAGATTCTCGTTCCGTACACCACCGGAAACTTCTACGGCCAGTGGAGCGCGGTCGGACGGACGGCGGTGACCACCACGCTCGCCGGATGCACGGCGGCGCTCACCACGCTCTTCGGGAAAAGATTCCTCTCCGGCCACTGGAACGTGACGGACGTTTGCAACGGACTCCTCGGCGGCTTCGCCGCCATCACCGCCGGCTGCTCCGTCGTCGAGCCCTGGGCGGCGATCATCTGCGGCTTCGTCGCCGCCGTCGTTCTTATATCCTGCAACCGTCTCGCCGAGATGGTGAAGTACGACGATCCTCTTGAAGCCGCCCAACTCCACGGCGGCTGCGGCGCGTGGGGAGTGATTTTCACAGCACTCTTCGCGAAGAAAGAATACGTGACGGAGGTGTACGGCGGATCCGGCCGTCCATACGGACTCCTGATGGGCGGCGGCGGAAGGTTGCTGGCGGCGCATTTGATACAGATTCTGGTGATCGTGGGATGGGTGAGTGCAACGATGGGGCCATTGTTCTTCGTTCTGCACAAACTGAATCTTCTGAGAATCTCCAGTGAAGATGAAATGGCTGGAATGGATCTGACCCGCCATGGAGGATTTGCTTACATTTATCACGATGAAGATGATGAAAAGAAAAGAGGGATTCAGTTGAGCAGAGTGGAACCGAAATCTGCAACTCCGACCGGAGATTATTGA 1503 58.75 MDSGFCSSHLSDLFGPNTTNATGAANFICDQLTTISNNFSDTKNALDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGYAFAFGAPSNGFIGRHNFGLSSFPTSTADYSVFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWAGAVKSGGGLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRYDHSGRSVALRGHSASLVVLGTFMLWFGWYGFNPGSFTKILVPYTTGNFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRFLSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIICGFVAAVVLISCNRLAEMVKYDDPLEAAQLHGGCGAWGVIFTALFAKKEYVTEVYGGSGRPYGLLMGGGGRLLAAHLIQILVIVGWVSATMGPLFFVLHKLNLLRISSEDEMAGMDLTRHGGFAYIYHDEDDEKKRGIQLSRVEPKSATPTGDY 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4121012 4122514 - Lag0021035.1 Lac7g0518 613419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0518 500 Pfam Ammonium Transporter Family 50 471 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lac7g0518 500 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lac7g0518 500 FunFam Ammonium transporter 28 486 - -
Lac7g0518 500 SUPERFAMILY Ammonium transporter 44 452 - -
Lac7g0518 500 PANTHER AMMONIUM TRANSPORTER 25 480 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Lac7g0518 500 Gene3D Ammonium transporter AmtB like domains 25 490 IPR029020 -
Lac7g0518 500 NCBIfam ammonium transporter 47 471 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2096 Lac-Chr12:38090381 Lac7g0518 Lac-Chr7:4121012 3.50E-232 dispersed
Lac6g1894 Lac-Chr6:32513523 Lac7g0518 Lac-Chr7:4121012 3.20E-204 dispersed
Lac11g2567 Lac-Chr11:41730680 Lac7g0518 Lac-Chr7:4121012 6.50E-199 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0518 K03320 - csv:101208366 900.968