Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0564 ATGAGAGCAAAGGCCTGGATTAACGAACAAATATTTGGCCTCAAGAGTAAACTTAGGAAAATGATAAATTGTATTCGTTCAGGGGATCGATTAAGAGTAGATGAAATGATGCATTCATCAGACTCGCTGGCAACTCGAGACTATTCAGCCAGTGGTTTTTCATCACGAACGGGGGAGGTGGAAACAAAGGTGGATAATGGCAACATTGAAGAAGCTGAATCATCTCTTCGTGAGAGTGGCTATCTGAATTATGAGGAAGCACGTGCTTTACTTGGAAGGCTCGAGTATCAAAAGGGTAACATAGAAGCTGCTCTTCATGTCTTTGAAGGAATAGATATTGCTGCTGTAATTTCCAGGATAAAAGCTTCCATTTCAACGCGATATGAACAAAATAGACGGCAATCACAAAGTGATGTTGTGCCCACTATGTCTATGCATGCCATTAGTTTACTTCTTGAAGCTGTTTTTCTGAAAGCAAAATCATTACAGGGTTTAGGAAGGTTTGTAGAGGCAGCCAAATCATGCAAACTAATTTTAGACACGGTTGAATCTGCATTGCCAGAAGGCTTACCTGAAAACTTCGCTATTGATTGTAAATTGCAAGAGACTCTAACAAAGGCTGTCGAATTGCTTCCAGAATTGTGGAAATCTGCTGGGTCTCCAGAAGAATCTATCTTGTCATATAGGCGTGCCCTTCTCTTTCAATGGAATCTAGAAATGAAAACCAGAGCAAAAATAGAAAAAGAGTTTGCAATATTCCTTCTCTATAGTGGTTGTGATGCAAGTCCTCCCAATCTCCGTTCGCAAATGGAAAGCTCATTTGTGCCAAGAAATAATATGGAAGAGGCTATTCTTCTGTTGATGGATCTGATGAGAAAATTTATACTTGGATTGATTGTATGGGACCCATCAATAATAGAGCATCTCTCGTTTGCACTGTCTATTTCAGGGGAATTTGGAGCTCTAGCTCATGAGGTTGAACAATTGCCTCCAGGAATTATAGGAAGAAAAGAAAAGTACTGCACCCTTGCTCTTTGTTACTATGGGGAAGGTAAAAGCTTGGCTGCGTTGAATCTGTTGAAGAACTTCTTGAGTAACATAGAAAACGTAGACTGCTTACTGGAATTATTGTTGGCTTCAAAGCTCTGTGGAGAAAATTTGGTTTGTCTTGATGAGGGGGTGACATACACATTGAGAGTGCTTTCGGAACTGCATGGTAAATGCATCCAGATGGCTTCTGTTGCTAACTGCTTACTTGGTGTGTTATTGTCAGCTGAATCCAAATTAGTTGCTTCTGATTCTCAGAAAACTTTGAAGCAATCTGAAGCACTCAAGGCACTACAAACTGCTGAGCAACTGATGAGACAAAGAGATCCATTCATAGTTTATCATCTTTGTCTTGAATATGCTGAACAGAGGAAGCTAGATATTGCTCTATACTATGCAAAACAGCTAGTGAAACTCGAGGCTGGCTCTAGTCTGAAATCTTACATCCTCTTGGCCAGAATATTGTCTGCCCAGAAACGGTTTGTGGATGCAGAGACTGTACTCAATGCTGCTCTTGAGCAGACAGGGAAGTGGGAACAAGGGGAACTCTTACGAACTAAAGCTAAGCTCCAGATTGCACAGGGCCAGTTGAAGAACGGTATAGAAACATATAGTCATCTTCTTGCTATAATTCAAATCCAGAACAAAAGTAATGGGGTTGGAAAGATGCTTTCAAAGGAAGTGAGAAAATCTGACCGAAGTCTGGAAATAGATACATGGCATGATTTAGCCAATATTTACACAAGCTTGTCTCAGTGGCGGGATGCTGAGATCTGTCTATCAAAATTGCAGGCAATCAATCCATATTCTGCTTCTAAATGGCACGCCACAGGTTTACTCTACGAGTCGAAGGGTCTCCCACGAGATGCTTTGCAAGCATACAACAAAGCATTGGACATTGATCCTGGCCATGTTCCCAGCTTGATATCAACTGCTTGTCTTCTCCAACAACTAGGTGGCAGCCAGTCATTTCCTGTGGTAAGAAGCTTGCTAACCGACGCCCTTCGACTAGATCGATCAAATCCTTCTGCGTGGTACAATCTCGGGCTGCTATATAAAGCTGACGTTGGGGCATCAGCGCTGGAGGTTGCTGAATGCTTTGAGGCTGCAACTCTGCTTGAAGAGTCAGCACCAGTTGAACCTTTCAGAAGATGA 2202 41.96 MRAKAWINEQIFGLKSKLRKMINCIRSGDRLRVDEMMHSSDSLATRDYSASGFSSRTGEVETKVDNGNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAVISRIKASISTRYEQNRRQSQSDVVPTMSMHAISLLLEAVFLKAKSLQGLGRFVEAAKSCKLILDTVESALPEGLPENFAIDCKLQETLTKAVELLPELWKSAGSPEESILSYRRALLFQWNLEMKTRAKIEKEFAIFLLYSGCDASPPNLRSQMESSFVPRNNMEEAILLLMDLMRKFILGLIVWDPSIIEHLSFALSISGEFGALAHEVEQLPPGIIGRKEKYCTLALCYYGEGKSLAALNLLKNFLSNIENVDCLLELLLASKLCGENLVCLDEGVTYTLRVLSELHGKCIQMASVANCLLGVLLSAESKLVASDSQKTLKQSEALKALQTAEQLMRQRDPFIVYHLCLEYAEQRKLDIALYYAKQLVKLEAGSSLKSYILLARILSAQKRFVDAETVLNAALEQTGKWEQGELLRTKAKLQIAQGQLKNGIETYSHLLAIIQIQNKSNGVGKMLSKEVRKSDRSLEIDTWHDLANIYTSLSQWRDAEICLSKLQAINPYSASKWHATGLLYESKGLPRDALQAYNKALDIDPGHVPSLISTACLLQQLGGSQSFPVVRSLLTDALRLDRSNPSAWYNLGLLYKADVGASALEVAECFEAATLLEESAPVEPFRR 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4460765 4464393 - Lag0021081.1 Lac7g0564 613465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0564 733 Pfam Tetratricopeptide repeat 624 652 IPR019734 GO:0005515(InterPro)
Lac7g0564 733 ProSiteProfiles TPR repeat profile. 620 653 IPR019734 GO:0005515(InterPro)
Lac7g0564 733 PANTHER PROTEIN NPG1 14 732 IPR043376 -
Lac7g0564 733 SUPERFAMILY TPR-like 531 702 IPR011990 GO:0005515(InterPro)
Lac7g0564 733 Gene3D Tetratricopeptide repeat domain 56 569 IPR011990 GO:0005515(InterPro)
Lac7g0564 733 SUPERFAMILY TPR-like 440 559 IPR011990 GO:0005515(InterPro)
Lac7g0564 733 Gene3D Tetratricopeptide repeat domain 571 727 IPR011990 GO:0005515(InterPro)
Lac7g0564 733 ProSiteProfiles Leucine-rich repeat profile. 353 374 IPR001611 GO:0005515(InterPro)
Lac7g0564 733 SMART tpr_5 152 185 IPR019734 GO:0005515(InterPro)
Lac7g0564 733 SMART tpr_5 494 527 IPR019734 GO:0005515(InterPro)
Lac7g0564 733 SMART tpr_5 620 653 IPR019734 GO:0005515(InterPro)
Lac7g0564 733 SMART tpr_5 530 563 IPR019734 GO:0005515(InterPro)
Lac7g0564 733 SMART tpr_5 586 619 IPR019734 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1040 Lac-Chr2:8275527 Lac7g0564 Lac-Chr7:4460765 2.40E-165 dispersed
Lac6g0246 Lac-Chr6:1984793 Lac7g0564 Lac-Chr7:4460765 1.80E-157 transposed
Lac11g2593 Lac-Chr11:41923014 Lac7g0564 Lac-Chr7:4460765 4.50E-244 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0564 K21843 - csv:101206105 1320.84