Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0597 ATGGATTACTCTGGATTCTTCTCTCCGGCGTCGGATTTCTCATCGGAATCATCGTTCGGCTCGCCGGAGTCGTCGTTCATGAATTTGGACCACAATTTTCTCCCTTTCAATGAGAATGACTCGGAGGAGATGCTTCTGTATGGGCTGATCTCGGAGGGGACACAGGAGTCGTCGGACACCGGCGTCGCGACGGCGCGAGTGAAGGAAGAGGAGGTGGATTCGATCGGCGAAGAGAGCCCGAAGAAGGAGAGGGCTTACAGGGGAGTCCGCCGACGGCCGTGGGGGAAATTCGCCGCGGAAATTAGAGATTCCACCCGACATGGCATAAGGGTCTGGTTGGGGACTTTCGACAGTGCCGAAGCCGCCGCTTTGGCCTACGATCAAGCCGCCTTTTCCATGAGGGGACCCGCCGCAATTCTCAATTTTCCCGTCGACACAGTCAGGGAGTCTCTCAAGGAAATGAACTCCGGCGGCGGAGGCGGTGATGGGTTCGCCGAGGACGGCGGGTCTCCGGTGGTGGCGTTGAAGAGAAAACACTCGATCAGAAGGAAAGCCATAAGCAAAAAGAGCAAAGAAAGGGATGTGAGGATCCAGAATATGGTGGTTTTGGAGGATTTAGGAGCAGAGTATTTGGAAGAACTTTTGGGCTCTTCTCAAAGTGGCAGCCCTTGTTCTTTCTAA 681 54.63 MDYSGFFSPASDFSSESSFGSPESSFMNLDHNFLPFNENDSEEMLLYGLISEGTQESSDTGVATARVKEEEVDSIGEESPKKERAYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGPAAILNFPVDTVRESLKEMNSGGGGGDGFAEDGGSPVVALKRKHSIRRKAISKKSKERDVRIQNMVVLEDLGAEYLEELLGSSQSGSPCSF 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4768871 4769551 - Lag0021114.1 Lac7g0597 613498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0597 226 Gene3D AP2/ERF domain 85 145 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac7g0597 226 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac7g0597 226 SUPERFAMILY DNA-binding domain 85 145 IPR016177 GO:0003677(InterPro)
Lac7g0597 226 CDD AP2 86 145 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac7g0597 226 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac7g0597 226 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac7g0597 226 FunFam Ethylene-responsive transcription factor 2 84 144 - -
Lac7g0597 226 PANTHER DNA-BINDING DOMAIN 52 184 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Lac7g0597 226 MobiDBLite consensus disorder prediction 8 24 - -
Lac7g0597 226 SMART rav1_2 85 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac7g0597 226 MobiDBLite consensus disorder prediction 1 24 - -
Lac7g0597 226 Pfam AP2 domain 86 135 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3376 Lac-Chr1:53368239 Lac7g0597 Lac-Chr7:4768871 2.20E-29 dispersed
Lac1g3377 Lac-Chr1:53369092 Lac7g0597 Lac-Chr7:4768871 2.80E-24 dispersed
Lac4g2184 Lac-Chr4:41482719 Lac7g0597 Lac-Chr7:4768871 7.20E-41 dispersed
Lac7g0597 Lac-Chr7:4768871 Lac7g0599 Lac-Chr7:4800496 1.90E-20 dispersed
Lac7g0597 Lac-Chr7:4768871 Lac7g0598 Lac-Chr7:4790919 4.50E-17 tandem
Lac10g0904 Lac-Chr10:7208330 Lac7g0597 Lac-Chr7:4768871 2.10E-14 wgd
Lac11g2619 Lac-Chr11:42197822 Lac7g0597 Lac-Chr7:4768871 1.90E-39 wgd
Lac12g2185 Lac-Chr12:38963186 Lac7g0597 Lac-Chr7:4768871 5.90E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24143 PF00847 AP2 1.30E-14 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0597 K14516 - csv:101210326 333.569