Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0603 ATGAATTTTGGATCATTTTTCAGTGACGAAGATGAGTTTAAATACTTGCTCATGCTCCTAGGATTTTTAGGAATTTGGAGGCGTTTCGGGACAAACCAGGCGGAACCAGGGTGTCCAGAGGCAGCGGGGACCAAACGGAGGCCATCGAGCTCAGCCCGACCCTTTGGTTTGGTCTTCCTCCGGGTCGGTTTCCTGGTCCTATCTCTACCCGGTTGTCCTCGTCAGCTCTTTGTGCCTCAGGAATTTCGTGGTGGCGGCTACAGAGGATCAGCATTCCGTTCCGACGGCGAGCAGGTGGGCCCGACAATGATCCCCAACCAGATAAACAAACGCGGCGGCCGGCAGTTAAATTCCGCTTTAATCGAGATTCCTTCCACTAAAAAGATTCAAATTCGTAGCAGACCTGCGCTCGACGTCGCTCTGATTCTGATTCCAGATCAGATGGATCCATTAGAGGACCCGAGTTGTTGGGATTTCCTTGATTCCTCCTTGTTCGTCGACGACCACACTATTCCCCACCCTTCGCTCGCTCCTTTCTGGCCGCCTAATGATTCCAGGGATAGTGGTGCGGATACTGATGTTTCAGCTGGGCGTGTTGAAACTGAGGAAACCGATTGTTCGCGGAAGAGGGCACGAGATGGGTCGTGCGCTGGACCAACTTCAAAAGCTTGTCGCGAGAGGTTGCGGAGAGAGAGATTAAATGATAGGTTTCTAGATTTGAGCGTTGCTTTAGAACCTGGTAGACCTACCAAAACTAACAAGCCAGCCATACTTGATGATGCCATTAGAGTGTTAAATCAACTAAAGACTGAAGCCGAAGAGCTCAAACAAACTAATGAAAAGTTGCGAGAAGAAGTGGAGAGTTTGAAGGCAGAAAAGAATGATCTTCGGAAGGAGAAGATCATTTTGAAGGAAGACAAAGAAAGAATCGAGCAACAGTTGAAATCTATAGCCATTCCACCTCCAGGGCTTATCCCTGGTCATCCAGCTGCATATCATGCTGCTCCAGGCAAGATGGCTGTTTTTCCCAGTTATGGTTTGATCCCAATGTGGCAATATCTTCCTCCTTCAGTGCGTGATACATCTCAAGATCATGAGCTCAGGCCTCCTGCTGCCTAG 1119 49.06 MNFGSFFSDEDEFKYLLMLLGFLGIWRRFGTNQAEPGCPEAAGTKRRPSSSARPFGLVFLRVGFLVLSLPGCPRQLFVPQEFRGGGYRGSAFRSDGEQVGPTMIPNQINKRGGRQLNSALIEIPSTKKIQIRSRPALDVALILIPDQMDPLEDPSCWDFLDSSLFVDDHTIPHPSLAPFWPPNDSRDSGADTDVSAGRVETEETDCSRKRARDGSCAGPTSKACRERLRRERLNDRFLDLSVALEPGRPTKTNKPAILDDAIRVLNQLKTEAEELKQTNEKLREEVESLKAEKNDLRKEKIILKEDKERIEQQLKSIAIPPPGLIPGHPAAYHAAPGKMAVFPSYGLIPMWQYLPPSVRDTSQDHELRPPAA 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4819218 4823384 + Lag0021120.1 Lac7g0603 613504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0603 372 Coils Coil 258 313 - -
Lac7g0603 372 Pfam Helix-loop-helix DNA-binding domain 221 269 IPR011598 GO:0046983(InterPro)
Lac7g0603 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 217 268 IPR011598 GO:0046983(InterPro)
Lac7g0603 372 SMART finulus 223 274 IPR011598 GO:0046983(InterPro)
Lac7g0603 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 220 288 IPR036638 GO:0046983(InterPro)
Lac7g0603 372 PANTHER BHLH TRANSCRIPTION FACTOR 185 372 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Lac7g0603 372 Gene3D - 220 301 IPR036638 GO:0046983(InterPro)
Lac7g0603 372 MobiDBLite consensus disorder prediction 191 212 - -
Lac7g0603 372 MobiDBLite consensus disorder prediction 176 221 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0620 Lac-Chr3:4803100 Lac7g0603 Lac-Chr7:4819218 9.60E-10 dispersed
Lac7g0603 Lac-Chr7:4819218 Lac9g2079 Lac-Chr9:40394046 5.10E-26 dispersed
Lac7g0603 Lac-Chr7:4819218 Lac2g1358 Lac-Chr2:11426874 5.50E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24146 PF00010 HLH 1.10E-07 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0603 - - - 0.0