Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0640 ATGAAACCTTCTCGTCTAAATTCCCTCCGGCGAGTTCAGTCCGGCGACCTCGTCATGAAGCTCCCCGACGATCCAGACGAATCCAAGAGGCCCCAATTCCCTCTCGATTCAAGTTGTTACAAAATCGTCGACGAAATTGGAGTCGGCGTCAGCGCCGTCGTCTACAAAGCCATCTGCGTTCCGATGAACTCTGCAGTGGTGGCCATCAAAGCCATCGACCTCGATCGATCACGAACCGATTTCGACGACATTCGAAGAGAAGCCAAAATTCTGTCACTTCTCTCTCACCCCAACATTTTAAACGCCCATTGTTCTTTCACTGTCGATCGGCAGCTCTGGGTCGTGATGCCGTTCATGTCGGCCGGTTCTCTGCAGTCCATCATTACGTCGTCGTTTCCCGATGGATTGCCGGAGCCCTGCATCGCCGTCGTTCTCCGTGAAATTCTCAACGCTCTGTCTTACCTCCACGACCAAGGCCACCTCCACCGCGACATTAAAGCCGGCAACATTCTGATGGACTCAAACGGGTCCGTCAAGCTCGCCGATTTCGGAGTTTCGACGTCGATTTTCGAGGCGAATTCGAAACAGGGGATGTCAATTTCTTCATTATCGAATTCGATGATGCTGAACGAAGTCGCCGGAACGCCGTACTGGATGGCACCGGAGGTGATCCACTCGCACAATGGGTATAGTTTGAAGGCGGATATATGGTCGTTTGGAATCACAGCGTTAGAATTAGCCCATGGACGGCCTCCCCTGTCTCATCTCCCTCCGTCCAAATCTCTGCTCCTGAAAATCACACGGCGGTTTCGATTCTCCGATTACGAGAAGCACCAAGACAGCAAGAACAGGAACAAATTCTCAAAAGGGTTCAAGGAAATGGTCGCGTCTTGTCTCGATCAGGAGCCATCAAAAAGACCCTGCGCGCAGAAATTGCTCAAACACTCGTTCTTCAGGAACTGCAAGGGCCCTGATCTTCTCGTAAAGACTGTGCTGCAGGGTTTGCCGAGCGTGGAAGAACGGTTCAAAGTGGGGAAACTGCAGCGACTGCCGTCGATGAAGAACGAGGAAGACGAGGAGGAGGAATTGGAGAAGGAGATTATAAAACAGAGGAGGATCAGTGGGTGGAATTTCAACGAGGATGGACTCGAACTGGAGCCTGTTTTTCCAGGGGAAAGTTGCGAGGCTGATGAGTGTTCGATTATAAAGCAGGTTCGATTCGGAGGGGAATCGATCATCGAGGAGAAGGGGTCGGGGGATTCGAGCGAGTGCTGTTCGGGGGTGTCGGAGGAGGTTGTGGAGAGGGAGTCGATAGTGGGGGGGCTGGTGGCGCTGAAGAGGAGCCTGGACGAGCAGAGGAGGGCGGTGGGGAGTTTGATAGAGCTGATGGAAGGAGAGAACGGAGGAGAGATTAGCAGAGAGGAGCAAATGGGGAGACTGATGGAGAAGATGACGAGGGAGTTGGAGAATGAGAGGAAGAGGAACTTTGAATTGGAGATGGAGTTGGAATTTCTCAGGCTTCAGATTTCCGCTGCTTGTAATAATGGCGGTGGTTCTGCCGCCATTCATAGCTGA 1575 52.38 MKPSRLNSLRRVQSGDLVMKLPDDPDESKRPQFPLDSSCYKIVDEIGVGVSAVVYKAICVPMNSAVVAIKAIDLDRSRTDFDDIRREAKILSLLSHPNILNAHCSFTVDRQLWVVMPFMSAGSLQSIITSSFPDGLPEPCIAVVLREILNALSYLHDQGHLHRDIKAGNILMDSNGSVKLADFGVSTSIFEANSKQGMSISSLSNSMMLNEVAGTPYWMAPEVIHSHNGYSLKADIWSFGITALELAHGRPPLSHLPPSKSLLLKITRRFRFSDYEKHQDSKNRNKFSKGFKEMVASCLDQEPSKRPCAQKLLKHSFFRNCKGPDLLVKTVLQGLPSVEERFKVGKLQRLPSMKNEEDEEEELEKEIIKQRRISGWNFNEDGLELEPVFPGESCEADECSIIKQVRFGGESIIEEKGSGDSSECCSGVSEEVVERESIVGGLVALKRSLDEQRRAVGSLIELMEGENGGEISREEQMGRLMEKMTRELENERKRNFELEMELEFLRLQISAACNNGGGSAAIHS 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5140768 5142342 - Lag0021157.1 Lac7g0640 613541

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0640 524 Gene3D Phosphorylase Kinase; domain 1 29 118 - -
Lac7g0640 524 Coils Coil 474 508 - -
Lac7g0640 524 SMART serkin_6 40 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac7g0640 524 Gene3D Transferase(Phosphotransferase) domain 1 122 372 - -
Lac7g0640 524 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 32 390 IPR047173 GO:0043539(InterPro)|GO:1902456(PANTHER)
Lac7g0640 524 SUPERFAMILY Protein kinase-like (PK-like) 39 335 IPR011009 -
Lac7g0640 524 Coils Coil 353 373 - -
Lac7g0640 524 Pfam Protein kinase domain 40 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac7g0640 524 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524(InterPro)
Lac7g0640 524 FunFam Serine/threonine-protein kinase BLUS1 29 118 - -
Lac7g0640 524 ProSiteProfiles Protein kinase domain profile. 40 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0640 K08835 - - csv:101215648 808.135
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g0640 Lac-Chr7:5140768 Lac8g2588 Lac-Chr8:43528216 1.10E-93 dispersed
Lac7g0640 Lac-Chr7:5140768 Lac5g2947 Lac-Chr5:47502179 1.50E-31 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac2g1245 . 1 694 MAP Kinase Kinase Kinase Kinase AT1G53165 62.6 7.8e-222 767.7
Lac13g0383 . 268 533 MAP Kinase Kinase Kinase Kinase AT1G53165 51.3 2.9e-67 254.2
Lac2g1245 . 1 693 MAP Kinase Kinase Kinase Kinase AT3G15220 64.7 1.7e-232 803.1
Lac13g0383 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 50.9 1.3e-67 255.4
Lac13g0383 . 4 837 MAP Kinase Kinase Kinase Kinase AT1G69220 59.4 2.8e-239 825.9
Lac2g1245 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 4.5e-67 253.8
Lac8g2588 . 1 658 MAP Kinase Kinase Kinase Kinase AT5G14720 67.6 7.6e-254 874.0
Lac7g0640 . 32 386 MAP Kinase Kinase Kinase Kinase AT5G14720 51.0 1.0e-96 352.1
Lac5g0129 . 7 677 MAP Kinase Kinase Kinase Kinase AT4G24100 61.6 5.7e-223 771.5
Lac5g0129 . 11 677 MAP Kinase Kinase Kinase Kinase AT4G10730 61.6 2.7e-222 769.2
Lac5g0129 . 5 339 MAP Kinase Kinase Kinase Kinase AT1G70430 51.4 1.3e-100 364.8
Lac11g0581 . 1 677 MAP Kinase Kinase Kinase Kinase AT1G79640 59.5 8.6e-218 754.2
Lac8g2588 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.8 4.2e-105 379.4
Lac11g0581 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 5.2e-87 319.3
Lac5g0129 . 17 251 MAP Kinase Kinase Kinase Kinase AT1G23700 54.2 1.2e-62 238.4
Lac7g0640 . 32 492 MAP Kinase Kinase Kinase Kinase AT4G14480 57.4 1.9e-142 503.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013881 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86319 PF00069 Pkinase 4.40E-59 CL0016 Lac PK