Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0709 ATGGGTAATGCAGATTTCGAATGCCCTCACCGAGTCGCCATTCCACCAACGAAGCCATTTTTGGAGTCCTTAGGCTCAAACCTCAAAGAAACTTTCTTCCCCGACGACCCTTTCAAACAGTTCAAAAACCAGCCTCTACGAACCCAGATCCTCCTCTGGTTCAAATACTTCGTCCCCTTCCTCGAATGGGCTCCTCGCTACACCCTCGACTTCTTCAAAGCCGACCTCGTCGCCGGTATCACCATCGCCAGTCTAGCCGTCCCTCAGGGCATCAGCTACGCCAATCTCGCCAGCATCCCTCCCATCATCGGACTTTATTCGAGCTTTGTCCCTCCGCTGATATACGCCATGCTTGGTAGCTCGAAGGACTTGGCGGTGGGGACGGTGGCGGTGGCGTCGTTGCTCATGTCCGCCATGTTGGGGAAGGAAGTCAGCCCGGTGGAGCATCCGAAGCAATACGTTCAGCTGGTTTTCACCGCCACCTTCTTCGCCGGAGTTTTTCAAGCCTCTCTCGGGTTTCTCAGATTGGGGCTTATTGTGGACTTTTTGTCGCATGCAACAATAGTGGGGTTCATGGGTGGTGCGGCAACGGTGGTTTGTCTTCAGCAGCTAAAAGGCATAATGGGATTAGTTCATTTTACGCATGAGACTGATATTATTTCCGTTATGCGCTCTGTTTTCTCTCAAGTTCATCAGTGGAGATGGGAAAGTATTGTGTTGGGCTGCTGTTTTCTCTTCTTTCTTCTCCTCACCAGATACTTGAGCAAGAAGAAGTCAATCTTCTTTTGGATAAATGCATTGGCTCCTTTGACTTCGGTCATTTTGGGAAGCCTTCTCGTCTACTTCACCCACGCTGAAAAGCATGGAGTTCAAGTGATTGGGCATTTGAAGAAAGGGTTGAATCCCCCATCTGTGTCTGATTTGGTATTTGGATCTCCCCATCTCGCCATTGCCATCAAAACGGGGATCATCATCGGAATCATAGGCCTTGCTGAAGGAGTTGCAGTGGGAAGAAGTTTTGCTGCATTTAAGAATTATCACATTGATGGAAACAAGGAGATGATAGCATTTGGGATGATGAACATTGTTGGTTCCTGCACTTCTTGCTACTTGACTGCAGGACCGTTTTCGAGGAGTGCTGTAAATTTTAATGCAGGATGTAAAACTGCAGTCTCGAATATCGTCATGGCCATTGCTCTGATGATCACTCTATTGTTTTTGACGCCATTTTTTCATTACACACCCCTGGTGGTGCTCTCCTCCATAATCATCACTGCTATGCTTGGCCTAATCAACTATGAAGAAGTCATCCACCTTTGGAAAATCGACAAATTTGACTTTGTCGTCTGCCTCGGTGCATATATCGGTGTCGTCTTTGGCAGTGTTGAAACGGGCTTGATCGTTGCGATCGCACTCTCCGTGTTAAGGTTGCTTCTCGTGATCGCAAGGCCAAGAACTTTAGTATTAGGCAACATTCCCAACTCCACAATTTACAGAAGCATTGATCAATACCCAACAGCTAACCATGTGCCTGGAATTCTCATCCTTCAATTGGAGGCACCCATCTATTTTGCCAACTCAAATTACCTGAGAGAAAGGCTTTCAAGGTGGATTACAGATGAAGAAGAGAGGATAAAATCATCAGGAGAAACCAGCTTGCAGTACATAATTCTAGACATTTCCGGCGTTAGTAGCATTGATTCAAGCGGGATCAGCATGCTTGAAGAGGTTAAGAAGAGCACTGAAAGAAAAGGTCTCAAACTTGTGCTTGCAAATCCAAGAAGTGAAGTGATCAAAAAGCTAAACAAGTCGAAGTTCATCGAAGCGATTGGGCAGGAATGGATCTATCTTACGGTGGGAGAGGCTGTAACAGCCTGCAACTTCATGCTCCACACTTGTAAGCCAAATCTTGTTGCTGCTGAATTAGATTCACCTGTGAACAATGTGTAG 1950 46.62 MGNADFECPHRVAIPPTKPFLESLGSNLKETFFPDDPFKQFKNQPLRTQILLWFKYFVPFLEWAPRYTLDFFKADLVAGITIASLAVPQGISYANLASIPPIIGLYSSFVPPLIYAMLGSSKDLAVGTVAVASLLMSAMLGKEVSPVEHPKQYVQLVFTATFFAGVFQASLGFLRLGLIVDFLSHATIVGFMGGAATVVCLQQLKGIMGLVHFTHETDIISVMRSVFSQVHQWRWESIVLGCCFLFFLLLTRYLSKKKSIFFWINALAPLTSVILGSLLVYFTHAEKHGVQVIGHLKKGLNPPSVSDLVFGSPHLAIAIKTGIIIGIIGLAEGVAVGRSFAAFKNYHIDGNKEMIAFGMMNIVGSCTSCYLTAGPFSRSAVNFNAGCKTAVSNIVMAIALMITLLFLTPFFHYTPLVVLSSIIITAMLGLINYEEVIHLWKIDKFDFVVCLGAYIGVVFGSVETGLIVAIALSVLRLLLVIARPRTLVLGNIPNSTIYRSIDQYPTANHVPGILILQLEAPIYFANSNYLRERLSRWITDEEERIKSSGETSLQYIILDISGVSSIDSSGISMLEEVKKSTERKGLKLVLANPRSEVIKKLNKSKFIEAIGQEWIYLTVGEAVTACNFMLHTCKPNLVAAELDSPVNNV 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5711075 5716067 + Lag0021226.1 Lac7g0709 613610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0709 649 CDD STAS_SulP_like_sulfate_transporter 504 619 - -
Lac7g0709 649 NCBIfam sulfate permease 59 622 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Lac7g0709 649 FunFam Sulfate transporter 31 483 629 - -
Lac7g0709 649 Gene3D STAS domain 483 628 IPR036513 -
Lac7g0709 649 SUPERFAMILY SpoIIaa-like 506 626 IPR036513 -
Lac7g0709 649 PANTHER SULFATE TRANSPORTER 47 626 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac7g0709 649 Pfam Sulfate permease family 72 451 IPR011547 GO:0016020(InterPro)
Lac7g0709 649 ProSitePatterns SLC26A transporters signature. 101 122 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Lac7g0709 649 ProSiteProfiles STAS domain profile. 503 626 IPR002645 -
Lac7g0709 649 Pfam STAS domain 504 622 IPR002645 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0887 Lac-Chr3:7161697 Lac7g0709 Lac-Chr7:5711075 2.40E-204 dispersed
Lac4g2856 Lac-Chr4:47177265 Lac7g0709 Lac-Chr7:5711075 9.80E-198 dispersed
Lac7g0709 Lac-Chr7:5711075 Lac8g1915 Lac-Chr8:37413485 7.20E-193 dispersed
Lac4g2246 Lac-Chr4:42165358 Lac7g0709 Lac-Chr7:5711075 4.00E-284 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0709 K17471 - csv:101203205 1160.59