Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0710 ATGGTTAAAATTGTTACAACTTGCAAAATTCAGGGTTCTTGTTACTACCATGCCCCATTAAACCTCCTCCAAAATGAAAACCTCAAAATCCCTTCTCCCAAAATCCCTCCTAATCTTCATTCTCATCCTCCTCCCAAAACCTTCCCATCAAGCATCTTCGCCGCTGCCATCGCCATCGCCATCGCCGCCATCCCTCCCGAACCCGAGGCTCCTCAAGGCCTACTCTGCTCTCCAAGCTTGGAAACACGCCATCACCGCCGACCCGACCAACTTCACCGCCGATTGGTACGGCCCCAATGTCTGCAACTACTCCGGCGTCTTCTGCGCCCCCGCCCCGACGACCCCTACATCCTCACCGTCGCCGGGATCGACCTCAACCACGCCAACCTCTCGGGCACCCTGCCCGACGACCTCGGCCTCCTGACCGACCTTGCCCTGTTCCACATCAACTCCAATCGCTTCTGCGGCACCATCCCCAACTCCTTCCGGTGCCTCACTCTCCTCTTCGAGCTGGACGTCAGCAACAATGACTTCTCCGGCGAGTTCCCTTCTGTAATTCTCTCTCTCCCATCTCTCAAATTCCTCGACATTCGATTCAACAAATTCCATGGCGATCTCCCTTCTCCCCTGTTTGACTTGAAACTCGATGCTCTGTTCATCAACAACAACGATTTCAAATTCTTCCTGCCGGAAAACATCGGCAATTCCCCTGTTTCCGTTCTGGTTTTTGCTAATAACAACATCAATGGCTGCCTCCCCTCGAGTTTATCCAATATGAACAGAACACTCAATGAAATTATAATCACGAGCAGTGGGTTGACTGGGTGTTTGCCGCCGGAAATTGGGTCGTTGAGCAATCTCACCGTCTTCGATGTCAGTGACAACAATCTCGTCGGGCCGTTGCCGGAGACGATGGCCGGAATGAAGAAATTGGAGCAGCTAAACGTCGCACATAACCAACTATCCGGCGAGATTCCGGCGAGTATTTGCTCGTTGCCGAAATTGCAGAATTTCACTTACTCGTATAACTTCTTCTGCAGTGAGCCGTCGGTGTGCCTGAAACTTCAAGCCAGTGATGACCGGAAAAATTGTTTGCCGGAAAGGCCGCTGCAACGTTCGCCGGAGGAATGTAAAGCTTTCTACTCTTATCCTGTTGATTGCACCGTCTTTGGCTGTACTCGTCGGCCGCCTCCGCCTCCGCCGCCTCCACCTCCACCTCCACCTCCACCACCACCACCTCCACCGCCGCCGCCACCTCCACCTCCACCTCCACCTCCGCCGCCGCTTTATTAG 1293 53.67 MVKIVTTCKIQGSCYYHAPLNLLQNENLKIPSPKIPPNLHSHPPPKTFPSSIFAAAIAIAIAAIPPEPEAPQGLLCSPSLETRHHRRPDQLHRRLVRPQCLQLLRRLLRPRPDDPYILTVAGIDLNHANLSGTLPDDLGLLTDLALFHINSNRFCGTIPNSFRCLTLLFELDVSNNDFSGEFPSVILSLPSLKFLDIRFNKFHGDLPSPLFDLKLDALFINNNDFKFFLPENIGNSPVSVLVFANNNINGCLPSSLSNMNRTLNEIIITSSGLTGCLPPEIGSLSNLTVFDVSDNNLVGPLPETMAGMKKLEQLNVAHNQLSGEIPASICSLPKLQNFTYSYNFFCSEPSVCLKLQASDDRKNCLPERPLQRSPEECKAFYSYPVDCTVFGCTRRPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPLY 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5721857 5723458 + Lag0021227.1 Lac7g0710 613611

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0710 430 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 259 348 - -
Lac7g0710 430 Pfam Leucine Rich Repeat 168 188 IPR001611 GO:0005515(InterPro)
Lac7g0710 430 Pfam Leucine Rich Repeat 191 212 IPR001611 GO:0005515(InterPro)
Lac7g0710 430 SUPERFAMILY L domain-like 116 354 - -
Lac7g0710 430 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 110 425 IPR051582 -
Lac7g0710 430 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 117 206 - -
Lac7g0710 430 Pfam Leucine rich repeat 262 321 IPR001611 GO:0005515(InterPro)
Lac7g0710 430 Gene3D Ribonuclease Inhibitor 117 367 IPR032675 -
Lac7g0710 430 MobiDBLite consensus disorder prediction 394 430 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0710 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0645 Lac-Chr6:5456797 Lac7g0710 Lac-Chr7:5721857 2.50E-07 dispersed
Lac6g0648 Lac-Chr6:5472295 Lac7g0710 Lac-Chr7:5721857 1.30E-37 dispersed
Lac6g2988 Lac-Chr6:47471664 Lac7g0710 Lac-Chr7:5721857 1.20E-19 dispersed
Lac7g0710 Lac-Chr7:5721857 Lac10g2515 Lac-Chr10:39032431 9.70E-45 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac2g0269 . 39 289 Leucine-rich Repeat extension Gene Families AT1G62440 61.7 2.6e-51 201.4
Lac4g0561 . 39 407 Leucine-rich Repeat extension Gene Families AT1G62440 53.1 6.5e-47 186.8
Lac2g0271 . 33 256 Leucine-rich Repeat extension Gene Families AT1G62440 64.7 8.5e-47 186.4
Lac3g0886 . 61 269 Leucine-rich Repeat extension Gene Families AT1G62440 62.4 4.2e-46 184.1
Lac6g2988 . 72 241 Leucine-rich Repeat extension Gene Families AT1G62440 70.0 6.3e-42 170.2
Lac3g0886 . 32 403 Leucine-rich Repeat extension Gene Families AT4G13340 78.3 7.9e-74 276.2
Lac6g2988 . 15 418 Leucine-rich Repeat extension Gene Families AT4G13340 71.6 1.3e-63 242.3
Lac2g0269 . 22 233 Leucine-rich Repeat extension Gene Families AT4G13340 63.2 1.1e-48 192.6
Lac4g0561 . 22 233 Leucine-rich Repeat extension Gene Families AT4G13340 61.3 7.7e-45 179.9
Lac2g0271 . 32 200 Leucine-rich Repeat extension Gene Families AT4G13340 72.2 6.5e-44 176.8
Lac3g0886 . 22 398 Leucine-rich Repeat extension Gene Families AT3G24480 75.4 3.4e-78 290.0
Lac6g2988 . 47 418 Leucine-rich Repeat extension Gene Families AT3G24480 73.8 7.7e-70 262.3
Lac2g0269 . 22 233 Leucine-rich Repeat extension Gene Families AT3G24480 67.1 1.6e-54 211.5
Lac4g0561 . 22 401 Leucine-rich Repeat extension Gene Families AT3G24480 55.8 5.2e-50 196.4
Lac2g0271 . 32 200 Leucine-rich Repeat extension Gene Families AT3G24480 75.1 5.3e-47 186.4
Lac7g0710 . 110 393 Leucine-rich Repeat extension Gene Families AT3G22800 76.8 9.0e-52 202.2
Lac3g0886 . 71 399 Leucine-rich Repeat extension Gene Families AT3G22800 65.3 3.1e-44 177.2
Lac12g0736 . 57 384 Leucine-rich Repeat extension Gene Families AT3G22800 61.1 5.1e-39 159.8
Lac2g0269 . 63 387 Leucine-rich Repeat extension Gene Families AT3G22800 53.1 3.1e-36 150.6
Lac3g0886 . 45 403 Leucine-rich Repeat extension Gene Families AT5G25550 58.7 3.3e-40 163.7
Lac6g2988 . 58 417 Leucine-rich Repeat extension Gene Families AT5G25550 63.0 8.0e-39 159.1
Lac4g0561 . 36 403 Leucine-rich Repeat extension Gene Families AT5G25550 53.2 1.2e-37 155.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006898 2 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 2 1 2 37