Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac7g0786 | ATGGCTCACATTGCTGTGGAGAGAAACAGGAGGAGGCAGATGAATGAACATCTTAGGGTTTTGAGATCCCTCACCCCTTGTTTCTACATCAAAAGGGGAGATCAAGCGTCGATTATTGGGGGAGTGATAGAGTTCATCAAGGAGTTGCATCAGGTTTTGCAGTCGTTGGAGTCGAACAAACGGAGGAGGAAGAGTGTGAGTCCTAGCCCTGGTCCGAGTCCGAGGCCGCAGGCGGTGGCGGTCGCCGATGGACCGTTTGGGTTTGAAAACGGAGTTGAGGTTGGAGCCTGTTGCAACTCGTCGGTTGCGGACGTCGAAGCGAAGATTTCGGGTTCGAACGTGTTGTTGAAGATCATTTCCCGACGGATTCCCGGGCAACTTTCGAAGATGATTGGTGTGTTGGAGAGGCTCTCCTTTGAGGTTCTTCATCTCAACATCAGTAGTATGGATGACACTGTTCTGTACTCTTTTGTTGTCAAGATAGGGCTTGAATGTCAGCTAAGTTTGGAGGAATTAGCTTTTGAAGTTCAACAAAGCTTCTGCTCTCAAGTTTACTTATGCCAGCAGTGA | 570 | 48.95 | MAHIAVERNRRRQMNEHLRVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVLQSLESNKRRRKSVSPSPGPSPRPQAVAVADGPFGFENGVEVGACCNSSVADVEAKISGSNVLLKIISRRIPGQLSKMIGVLERLSFEVLHLNISSMDDTVLYSFVVKIGLECQLSLEELAFEVQQSFCSQVYLCQQ | 189 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 6273204 | 6274843 | + | Lag0021303.1 | Lac7g0786 | 613687 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac7g0786 | 189 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 1 | 49 | IPR011598 | GO:0046983(InterPro) | |
| Lac7g0786 | 189 | FunFam | Transcription factor MUTE | 1 | 67 | - | - | |
| Lac7g0786 | 189 | SMART | finulus | 4 | 55 | IPR011598 | GO:0046983(InterPro) | |
| Lac7g0786 | 189 | CDD | bHLH_AtFAMA_like | 1 | 64 | - | - | |
| Lac7g0786 | 189 | Gene3D | - | 1 | 65 | IPR036638 | GO:0046983(InterPro) | |
| Lac7g0786 | 189 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 1 | 63 | IPR036638 | GO:0046983(InterPro) | |
| Lac7g0786 | 189 | MobiDBLite | consensus disorder prediction | 59 | 78 | - | - | |
| Lac7g0786 | 189 | PANTHER | TRANSCRIPTION FACTOR FAMA | 1 | 180 | IPR044283 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER) | |
| Lac7g0786 | 189 | Pfam | Helix-loop-helix DNA-binding domain | 1 | 50 | IPR011598 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac7g0463 | Lac-Chr7:3674860 | Lac7g0786 | Lac-Chr7:6273204 | 7.50E-38 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 24158 | PF00010 | HLH | 1.00E-07 | No_clan | Lac | TF |
Pathway information