Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0788 ATGTCGGTAGAGAGAGAAGGACGTGAGACACGTGGCCAGCATCTCAGCATTGAAAAACGACACGTCGGAACAGAGTTAGACGTAGAACCGTCAAATAGAAAACGGAGGTCAACGGCTGAACAAGGACTAGTTTCTTCAACTTCACACAAACTACTTTTCCCAAATTCTTCAGCAGAAAAAGAAATTTCCCAAATCTTCATTCGTTTCTTCTCCTCCTCCGATCTCCCAATCCAGAAAATGGGTATTTCATGGAGTAACAGAAGAAGAAACAACTATCTTCAAAACCCACCTCCGCCTCCTCATCCGCCCTACCTTTCTTCTTCCTCTTTCTATTACCCTTCAGAACCCCAATCTCTTTCTCCGACTCCACCGCCGCCGCCGCCGCCGCCACCGCCGACGACCCATCAGTTCACCAATTCCCACCCTCCTCCCCCTCACGGCCACCCTTACGGTCCAACTCCTCAGCCGCTAACTCTGCCGCCGATTCATCCTCCCCCTGCCCCAGCTCCTCACTCCTATTACTTCTCCGGTGGGTACAATTCGTGTAATTATGGGAATTCTTCGATGGGTCGTTTCAATTTTCACCCTTACTTTGCCAATCAGAGTAATGGGTGGTCGCAAATTCGGCCGGTGATGGGGCCGCCGTTGCTTCCGCCACCGCCTCTGCCGTTTGTGGAGCATCGGCAGGCGAAGAAGGTTAGAAATGATGTGAATGTGCATAAGGATACTTTGAGGATTGAGGTGGACGAGCAGAACCCTGATCAGCACTTGGTTTCTTTCGTTTTCGATGCGTTGTATGATGGAAGCATAACCATTCTATTTTTTGCCAAGGAAGAGCCCAACTGTAGGTTTGTTCCAGTATATCCCGATGCCTTTAAGCCAGTGAAAATCCCATTTCAGAAGGGTCCTGCTCAGAAATTCTTTCAGCCTGTGGGAACTGGCTTTGACTTGGGATTTTTCGAGTTGGATGACCTCTCAAAACCTTCACCTGCTGAAGATGTTTTCCCTCTTGTCATATCAGCTGAGACTTGTTCACCCTCTCAGTCCAATGATGAAAGAATTGGTGAGCCTCAATCAGATAATTCACACATGCAAATCACTCAAGCTATTCTGGAGAAGAAAAATGGTGGTCCTTTCCAAGTTAGAGTGATCAGGCAGCTACTGTGGATTGATGGAGTGCGATATGAGTTGCGTGAGATATTTGGAATAGGGAGTTCATCAGCAGAAGGTTTTGACGATAATGACACCGGGAAGGAGTGTGTGATTTGCATGACTGAACCCAAGGATACTGCTGTATTACCATGCCGACATATGTGCATGTGCAGTGAGTGTGCCAAGGAACTCAGGCTTCAATCTAATAAATGTCCCATTTGTCGTCAACCAATTGAAGAACTTATAGAAATCAAGATAAATAATAGCGACCAGTGA 1428 47.13 MSVEREGRETRGQHLSIEKRHVGTELDVEPSNRKRRSTAEQGLVSSTSHKLLFPNSSAEKEISQIFIRFFSSSDLPIQKMGISWSNRRRNNYLQNPPPPPHPPYLSSSSFYYPSEPQSLSPTPPPPPPPPPPTTHQFTNSHPPPPHGHPYGPTPQPLTLPPIHPPPAPAPHSYYFSGGYNSCNYGNSSMGRFNFHPYFANQSNGWSQIRPVMGPPLLPPPPLPFVEHRQAKKVRNDVNVHKDTLRIEVDEQNPDQHLVSFVFDALYDGSITILFFAKEEPNCRFVPVYPDAFKPVKIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPAEDVFPLVISAETCSPSQSNDERIGEPQSDNSHMQITQAILEKKNGGPFQVRVIRQLLWIDGVRYELREIFGIGSSSAEGFDDNDTGKECVICMTEPKDTAVLPCRHMCMCSECAKELRLQSNKCPICRQPIEELIEIKINNSDQ 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6301215 6304422 - Lag0021305.1 Lac7g0788 613689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0788 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 405 469 IPR013083 -
Lac7g0788 475 MobiDBLite consensus disorder prediction 88 165 - -
Lac7g0788 475 PANTHER MAHOGUNIN 80 473 IPR045194 GO:0016567(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)
Lac7g0788 475 FunFam probable E3 ubiquitin-protein ligase LOG2 404 469 - -
Lac7g0788 475 ProSiteProfiles Zinc finger RING-type profile. 420 459 IPR001841 -
Lac7g0788 475 MobiDBLite consensus disorder prediction 1 36 - -
Lac7g0788 475 CDD mRING-HC-C3HC5_MGRN1-like 418 459 IPR045195 -
Lac7g0788 475 SMART ring_2 420 458 IPR001841 -
Lac7g0788 475 SUPERFAMILY RING/U-box 419 465 - -
Lac7g0788 475 MobiDBLite consensus disorder prediction 1 46 - -
Lac7g0788 475 MobiDBLite consensus disorder prediction 117 165 - -
Lac7g0788 475 Pfam Zinc finger, C3HC4 type (RING finger) 418 464 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3022 Lac-Chr10:44793030 Lac7g0788 Lac-Chr7:6301215 6.80E-79 dispersed
Lac7g0788 Lac-Chr7:6301215 Lac8g1253 Lac-Chr8:27364287 1.50E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0788 K27504 - csv:101203938 674.085