Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac7g0837 | ATGTCTTTGAGGAGTATAATCCAGGAAATGAGATCCAGGTCCCGCCGTGTGGTTCAGGACGGATCGACGCCCGAAGTCGGCGACGGTTTGGCGCAGAGCTGTTGGGCTCACATGCCTCAGGAGTTGCTGAGGGAGGTTCTGATTAGAATTGAGAGCTCTGAGAATGCTTGGCCTCCGCGGAAGAGCGTCGTGGCCTGCGCCGGAGTTTGCCGGAGCTGGAGACGGATTACCAAGGAGATTGTTAAAACTCCCGAGGTTTCCGGCAGATTGACGTTTCCTATTTCCGTTAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCACTGCATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAACTAAGATCTAATTTTTTAGGAACCAAGTTCACAATCTTTGATGGACAGCCACCTCATGCAGGAGCCAAGATTTCAAAAAGCCGCTCCTCTAGGCTTGTGGGCCTCAAACAAGTGTCACCTAGAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGGTCAAGAGAGGCTAATATGGTTTATATTGCCATCAGGGGTCCAAGGAGGATGCATTGTGTCATGGATGCCATTCCTGCCTCCGCTATTGAACCAGGAGGGATGGCTCCAATACAGACTGAATTCTCGCCAAGCCGTATAGATTTTCTTCCATCATTGAGATTTTCCCGGTCAAAATCAAATCTAATGGACGATCAACCATCGGGATCTTCAACTAATCAGAAAGATGGAGGTCTGGTGCTGAGAAACAAGGCCCCTCGGTGGCATGAACAGCTCCAGTGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATTGCTTCAGTGAAAAACTTTCAGTTAGTAGCTTCACCTGAAAATGGAATTGCTGGACCTGAACACGAGAAGATCATCCTTCAATTTGGAAAAGTAGGAAAGGATATATTTACAATGGACTACAGATATCCAATCTCAGCGTTTCAGGCTTTTGCCATCTGCCTCAGCAGCTTCGATACAAAGATCGCATGTGAATGA | 1194 | 47.49 | MSLRSIIQEMRSRSRRVVQDGSTPEVGDGLAQSCWAHMPQELLREVLIRIESSENAWPPRKSVVACAGVCRSWRRITKEIVKTPEVSGRLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPHAGAKISKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSREANMVYIAIRGPRRMHCVMDAIPASAIEPGGMAPIQTEFSPSRIDFLPSLRFSRSKSNLMDDQPSGSSTNQKDGGLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGIAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE | 397 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 6759323 | 6762780 | + | Lag0021354.1 | Lac7g0837 | 613738 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac7g0837 | 397 | CDD | F-box_AtTLP-like | 35 | 79 | - | - | |
Lac7g0837 | 397 | MobiDBLite | consensus disorder prediction | 287 | 306 | - | - | |
Lac7g0837 | 397 | FunFam | Tubby-like F-box protein | 92 | 397 | - | - | |
Lac7g0837 | 397 | ProSitePatterns | Tub family signature 1. | 327 | 340 | IPR018066 | - | |
Lac7g0837 | 397 | Gene3D | Tubby Protein; Chain A | 92 | 397 | IPR025659 | - | |
Lac7g0837 | 397 | SUPERFAMILY | F-box domain | 29 | 78 | IPR036047 | GO:0005515(InterPro) | |
Lac7g0837 | 397 | Pfam | Tub family | 96 | 392 | IPR000007 | - | |
Lac7g0837 | 397 | PRINTS | Tubby superfamily signature | 166 | 190 | IPR000007 | - | |
Lac7g0837 | 397 | PRINTS | Tubby superfamily signature | 309 | 326 | IPR000007 | - | |
Lac7g0837 | 397 | PRINTS | Tubby superfamily signature | 327 | 343 | IPR000007 | - | |
Lac7g0837 | 397 | PRINTS | Tubby superfamily signature | 215 | 242 | IPR000007 | - | |
Lac7g0837 | 397 | PRINTS | Tubby superfamily signature | 354 | 373 | IPR000007 | - | |
Lac7g0837 | 397 | PRINTS | Tubby superfamily signature | 375 | 397 | IPR000007 | - | |
Lac7g0837 | 397 | PRINTS | Tubby superfamily signature | 150 | 166 | IPR000007 | - | |
Lac7g0837 | 397 | ProSitePatterns | Tub family signature 2. | 382 | 397 | IPR018066 | - | |
Lac7g0837 | 397 | SUPERFAMILY | Tubby C-terminal domain-like | 84 | 397 | IPR025659 | - | |
Lac7g0837 | 397 | Gene3D | - | 29 | 82 | - | - | |
Lac7g0837 | 397 | PANTHER | TUBBY-RELATED | 28 | 396 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac5g2113 | Lac-Chr5:39768262 | Lac7g0837 | Lac-Chr7:6759323 | 8.50E-120 | dispersed | |
Lac7g0837 | Lac-Chr7:6759323 | Lac8g1678 | Lac-Chr8:34901823 | 3.20E-119 | dispersed | |
Lac4g2724 | Lac-Chr4:46178476 | Lac7g0837 | Lac-Chr7:6759323 | 6.80E-11 | transposed | |
Lac2g1686 | Lac-Chr2:15347784 | Lac7g0837 | Lac-Chr7:6759323 | 4.10E-120 | transposed | |
Lac12g2379 | Lac-Chr12:40902928 | Lac7g0837 | Lac-Chr7:6759323 | 6.40E-184 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24162 | PF01167 | Tub | 9.20E-106 | CL0395 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac7g0837 | K19600 | - | csv:101217713 | 748.814 |