Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0837 ATGTCTTTGAGGAGTATAATCCAGGAAATGAGATCCAGGTCCCGCCGTGTGGTTCAGGACGGATCGACGCCCGAAGTCGGCGACGGTTTGGCGCAGAGCTGTTGGGCTCACATGCCTCAGGAGTTGCTGAGGGAGGTTCTGATTAGAATTGAGAGCTCTGAGAATGCTTGGCCTCCGCGGAAGAGCGTCGTGGCCTGCGCCGGAGTTTGCCGGAGCTGGAGACGGATTACCAAGGAGATTGTTAAAACTCCCGAGGTTTCCGGCAGATTGACGTTTCCTATTTCCGTTAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCACTGCATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAACTAAGATCTAATTTTTTAGGAACCAAGTTCACAATCTTTGATGGACAGCCACCTCATGCAGGAGCCAAGATTTCAAAAAGCCGCTCCTCTAGGCTTGTGGGCCTCAAACAAGTGTCACCTAGAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGGTCAAGAGAGGCTAATATGGTTTATATTGCCATCAGGGGTCCAAGGAGGATGCATTGTGTCATGGATGCCATTCCTGCCTCCGCTATTGAACCAGGAGGGATGGCTCCAATACAGACTGAATTCTCGCCAAGCCGTATAGATTTTCTTCCATCATTGAGATTTTCCCGGTCAAAATCAAATCTAATGGACGATCAACCATCGGGATCTTCAACTAATCAGAAAGATGGAGGTCTGGTGCTGAGAAACAAGGCCCCTCGGTGGCATGAACAGCTCCAGTGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATTGCTTCAGTGAAAAACTTTCAGTTAGTAGCTTCACCTGAAAATGGAATTGCTGGACCTGAACACGAGAAGATCATCCTTCAATTTGGAAAAGTAGGAAAGGATATATTTACAATGGACTACAGATATCCAATCTCAGCGTTTCAGGCTTTTGCCATCTGCCTCAGCAGCTTCGATACAAAGATCGCATGTGAATGA 1194 47.49 MSLRSIIQEMRSRSRRVVQDGSTPEVGDGLAQSCWAHMPQELLREVLIRIESSENAWPPRKSVVACAGVCRSWRRITKEIVKTPEVSGRLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPHAGAKISKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSREANMVYIAIRGPRRMHCVMDAIPASAIEPGGMAPIQTEFSPSRIDFLPSLRFSRSKSNLMDDQPSGSSTNQKDGGLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGIAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6759323 6762780 + Lag0021354.1 Lac7g0837 613738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0837 397 CDD F-box_AtTLP-like 35 79 - -
Lac7g0837 397 MobiDBLite consensus disorder prediction 287 306 - -
Lac7g0837 397 FunFam Tubby-like F-box protein 92 397 - -
Lac7g0837 397 ProSitePatterns Tub family signature 1. 327 340 IPR018066 -
Lac7g0837 397 Gene3D Tubby Protein; Chain A 92 397 IPR025659 -
Lac7g0837 397 SUPERFAMILY F-box domain 29 78 IPR036047 GO:0005515(InterPro)
Lac7g0837 397 Pfam Tub family 96 392 IPR000007 -
Lac7g0837 397 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Lac7g0837 397 PRINTS Tubby superfamily signature 309 326 IPR000007 -
Lac7g0837 397 PRINTS Tubby superfamily signature 327 343 IPR000007 -
Lac7g0837 397 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Lac7g0837 397 PRINTS Tubby superfamily signature 354 373 IPR000007 -
Lac7g0837 397 PRINTS Tubby superfamily signature 375 397 IPR000007 -
Lac7g0837 397 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Lac7g0837 397 ProSitePatterns Tub family signature 2. 382 397 IPR018066 -
Lac7g0837 397 SUPERFAMILY Tubby C-terminal domain-like 84 397 IPR025659 -
Lac7g0837 397 Gene3D - 29 82 - -
Lac7g0837 397 PANTHER TUBBY-RELATED 28 396 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2113 Lac-Chr5:39768262 Lac7g0837 Lac-Chr7:6759323 8.50E-120 dispersed
Lac7g0837 Lac-Chr7:6759323 Lac8g1678 Lac-Chr8:34901823 3.20E-119 dispersed
Lac4g2724 Lac-Chr4:46178476 Lac7g0837 Lac-Chr7:6759323 6.80E-11 transposed
Lac2g1686 Lac-Chr2:15347784 Lac7g0837 Lac-Chr7:6759323 4.10E-120 transposed
Lac12g2379 Lac-Chr12:40902928 Lac7g0837 Lac-Chr7:6759323 6.40E-184 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24162 PF01167 Tub 9.20E-106 CL0395 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0837 K19600 - csv:101217713 748.814