Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac7g0838 | ATGGGGTGTGTTTTTGGGCGAGAGGTATCGGCCAAGCCCGTCGAGAGAGAGAAAGCCGGGGAGGAAATTAGGGCTTCGGCGAAAGCGGAGGTCGGTGAGGTTCCGGTTAATGTCGATGGTAATGTTCGCAATGGCGGCAGTAGGAAGGAGGTTGAAGATGATAGAGGTTCGAGGCCGCGGCGGCGATCGTCCAGGCCGAATCCGAGATCGAGTAATCCGCCGAAGCATGTGCATGGCGAGCAAGTCGCTGCTGGTTGGCCGTCTTGGCTCTCCGCCGTCGCCGGCGAGGCTATCAATGGATGGATTCCTCGCCGTGCTGACAGTTTTGAGAAGCTTGATAAAATTGGGCAAGGGACGTATAGTAATGTGTACAAAGCAAGGGACACATTGACAGGGAAGATTGTGGCTCTAAAGAAGGTTCGTTTTGACAATTTGGAGCCTGAGAGTGTGAGGTTTATGGCCCGGGAAATTCTCATCCTGCGACGTTTGGATCATCCAAATGTTGTAAAGCTCGAAGGCTTGGTGACGTCGCGGATGTCGTGTAGTTTGTATCTTGTGTTTGAATACATGGAGCATGATTTGGCTGGACTTGCTGCGAGCCCCGGGATCAAGTTTACGGAACCGCAGGTTAAATGTTACATGAACCAATTGTTATCAGGGCTTGAACACTGTCACAATCGTCATGTGCTGCATCGTGATATAAAGGGATCAAATCTTCTGATTGATAATGGTGGGATCCTTAAGATAGCTGATTTTGGATTGGCTTCTGTCTTTGATCCCAACCACAAGCAGCCGATGACGAGTAGGGTGGTTACGCTTTGGTATCGACCTCCCGAACTTCTTCTTGGAGCTACTGATTATGGCGTTGGTGTAGACCTTTGGAGTGCTGGCTGCATTTTAGCTGAGCTTTTAGCTGGAAAGCCGATCATGCCCGGTCGCACGGAGGTCGAGCAGCTACACAAGATATTCAAGCTATGTGGCTCTCCTACAGAAGAATACTGGAAAAAGTCGAGATTGCCACATGCGACCATATTTAAGCCTCAACATTCATACAAGAGATGCATATCAGAGACGTTTAAAGACTTCCCGCCATCATCTCTGCCATTAATCGAGACACTTCTTGCAATCGACCCGGCTGAACGCCTAACTGCCACGGCTGCTTTACATAGTGAATTTTTCACTACCAAGCCATATGCTTGTGAGCCTTCCAGCCTTCCCAAGTATCCTCCAAGCAAGGAAATGGATGCAAAACTGCGGGATGAAGAAGCAAGAAGGCTAAGAGCTGCTGGCAGAAGCAATGCAGATGGGGTGAAGAAAGCACGAGCACGCGATCGAGCTGTTCGGGCAATTCCTGCTCCAGAAGCCAATGCTGAGCTTCAAGCCAACCTCGATAGGCGGCGTCTCATAACACACGCAAATGCGAAGAGCAAGAGTGAAAAGTTTCCTCCTCCACATCAAGACGGAGCACTTGGCTACCCACTGGGATCTTCGCATCACGTCGATCCAATCTACGATCCTCCCGACGTTCCATTTAGCACCATGAATTTCTCATATCCAAAAGCAAACATCCAAACATGGTCTGGTCCCTTGATGGACCCAGCTGCTGTTGGTGCTCCAAGAAGGAAAAAACACACAGCAGGTCATTCATCAAAATCATCTGACTTGCGGAAGGATAAAAATTCTGCTCGTATCTAA | 1695 | 49.38 | MGCVFGREVSAKPVEREKAGEEIRASAKAEVGEVPVNVDGNVRNGGSRKEVEDDRGSRPRRRSSRPNPRSSNPPKHVHGEQVAAGWPSWLSAVAGEAINGWIPRRADSFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPGIKFTEPQVKCYMNQLLSGLEHCHNRHVLHRDIKGSNLLIDNGGILKIADFGLASVFDPNHKQPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTEEYWKKSRLPHATIFKPQHSYKRCISETFKDFPPSSLPLIETLLAIDPAERLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNADGVKKARARDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSHHVDPIYDPPDVPFSTMNFSYPKANIQTWSGPLMDPAAVGAPRRKKHTAGHSSKSSDLRKDKNSARI | 564 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 6765851 | 6768916 | - | Lag0021355.1 | Lac7g0838 | 613739 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac7g0838 | 564 | CDD | STKc_CDK9_like | 109 | 393 | - | - | |
Lac7g0838 | 564 | MobiDBLite | consensus disorder prediction | 45 | 61 | - | - | |
Lac7g0838 | 564 | MobiDBLite | consensus disorder prediction | 548 | 564 | - | - | |
Lac7g0838 | 564 | MobiDBLite | consensus disorder prediction | 10 | 28 | - | - | |
Lac7g0838 | 564 | ProSiteProfiles | Protein kinase domain profile. | 109 | 393 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac7g0838 | 564 | MobiDBLite | consensus disorder prediction | 1 | 81 | - | - | |
Lac7g0838 | 564 | Pfam | Protein kinase domain | 109 | 393 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac7g0838 | 564 | SUPERFAMILY | Protein kinase-like (PK-like) | 102 | 398 | IPR011009 | - | |
Lac7g0838 | 564 | Gene3D | Phosphorylase Kinase; domain 1 | 96 | 191 | - | - | |
Lac7g0838 | 564 | SMART | serkin_6 | 109 | 393 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac7g0838 | 564 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 229 | 241 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac7g0838 | 564 | ProSitePatterns | Protein kinases ATP-binding region signature. | 115 | 138 | IPR017441 | GO:0005524(InterPro) | |
Lac7g0838 | 564 | FunFam | probable serine/threonine-protein kinase At1g54610 | 192 | 433 | - | - | |
Lac7g0838 | 564 | MobiDBLite | consensus disorder prediction | 473 | 494 | - | - | |
Lac7g0838 | 564 | PANTHER | CELL DIVISION PROTEIN KINASE | 108 | 393 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Lac7g0838 | 564 | Gene3D | Transferase(Phosphotransferase) domain 1 | 192 | 432 | - | - | |
Lac7g0838 | 564 | FunFam | probable serine/threonine-protein kinase At1g54610 | 96 | 191 | - | - | |
Lac7g0838 | 564 | MobiDBLite | consensus disorder prediction | 527 | 564 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0120 | Lac-Chr10:912014 | Lac7g0838 | Lac-Chr7:6765851 | 1.40E-157 | dispersed | |
Lac10g0606 | Lac-Chr10:4651684 | Lac7g0838 | Lac-Chr7:6765851 | 2.00E-199 | dispersed | |
Lac1g2429 | Lac-Chr1:45756435 | Lac7g0838 | Lac-Chr7:6765851 | 1.60E-119 | dispersed | |
Lac2g2314 | Lac-Chr2:31681395 | Lac7g0838 | Lac-Chr7:6765851 | 4.50E-122 | dispersed | |
Lac5g2461 | Lac-Chr5:43197045 | Lac7g0838 | Lac-Chr7:6765851 | 1.10E-181 | dispersed | |
Lac6g2719 | Lac-Chr6:44960971 | Lac7g0838 | Lac-Chr7:6765851 | 7.60E-223 | dispersed | |
Lac7g0838 | Lac-Chr7:6765851 | Lac9g2169 | Lac-Chr9:41161338 | 3.00E-163 | dispersed | |
Lac7g0838 | Lac-Chr7:6765851 | Lac3g2293 | Lac-Chr3:31237655 | 2.10E-233 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86327 | PF00069 | Pkinase | 1.20E-68 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac7g0838 | K08819 | - | csv:101217952 | 1016.91 |