Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0838 ATGGGGTGTGTTTTTGGGCGAGAGGTATCGGCCAAGCCCGTCGAGAGAGAGAAAGCCGGGGAGGAAATTAGGGCTTCGGCGAAAGCGGAGGTCGGTGAGGTTCCGGTTAATGTCGATGGTAATGTTCGCAATGGCGGCAGTAGGAAGGAGGTTGAAGATGATAGAGGTTCGAGGCCGCGGCGGCGATCGTCCAGGCCGAATCCGAGATCGAGTAATCCGCCGAAGCATGTGCATGGCGAGCAAGTCGCTGCTGGTTGGCCGTCTTGGCTCTCCGCCGTCGCCGGCGAGGCTATCAATGGATGGATTCCTCGCCGTGCTGACAGTTTTGAGAAGCTTGATAAAATTGGGCAAGGGACGTATAGTAATGTGTACAAAGCAAGGGACACATTGACAGGGAAGATTGTGGCTCTAAAGAAGGTTCGTTTTGACAATTTGGAGCCTGAGAGTGTGAGGTTTATGGCCCGGGAAATTCTCATCCTGCGACGTTTGGATCATCCAAATGTTGTAAAGCTCGAAGGCTTGGTGACGTCGCGGATGTCGTGTAGTTTGTATCTTGTGTTTGAATACATGGAGCATGATTTGGCTGGACTTGCTGCGAGCCCCGGGATCAAGTTTACGGAACCGCAGGTTAAATGTTACATGAACCAATTGTTATCAGGGCTTGAACACTGTCACAATCGTCATGTGCTGCATCGTGATATAAAGGGATCAAATCTTCTGATTGATAATGGTGGGATCCTTAAGATAGCTGATTTTGGATTGGCTTCTGTCTTTGATCCCAACCACAAGCAGCCGATGACGAGTAGGGTGGTTACGCTTTGGTATCGACCTCCCGAACTTCTTCTTGGAGCTACTGATTATGGCGTTGGTGTAGACCTTTGGAGTGCTGGCTGCATTTTAGCTGAGCTTTTAGCTGGAAAGCCGATCATGCCCGGTCGCACGGAGGTCGAGCAGCTACACAAGATATTCAAGCTATGTGGCTCTCCTACAGAAGAATACTGGAAAAAGTCGAGATTGCCACATGCGACCATATTTAAGCCTCAACATTCATACAAGAGATGCATATCAGAGACGTTTAAAGACTTCCCGCCATCATCTCTGCCATTAATCGAGACACTTCTTGCAATCGACCCGGCTGAACGCCTAACTGCCACGGCTGCTTTACATAGTGAATTTTTCACTACCAAGCCATATGCTTGTGAGCCTTCCAGCCTTCCCAAGTATCCTCCAAGCAAGGAAATGGATGCAAAACTGCGGGATGAAGAAGCAAGAAGGCTAAGAGCTGCTGGCAGAAGCAATGCAGATGGGGTGAAGAAAGCACGAGCACGCGATCGAGCTGTTCGGGCAATTCCTGCTCCAGAAGCCAATGCTGAGCTTCAAGCCAACCTCGATAGGCGGCGTCTCATAACACACGCAAATGCGAAGAGCAAGAGTGAAAAGTTTCCTCCTCCACATCAAGACGGAGCACTTGGCTACCCACTGGGATCTTCGCATCACGTCGATCCAATCTACGATCCTCCCGACGTTCCATTTAGCACCATGAATTTCTCATATCCAAAAGCAAACATCCAAACATGGTCTGGTCCCTTGATGGACCCAGCTGCTGTTGGTGCTCCAAGAAGGAAAAAACACACAGCAGGTCATTCATCAAAATCATCTGACTTGCGGAAGGATAAAAATTCTGCTCGTATCTAA 1695 49.38 MGCVFGREVSAKPVEREKAGEEIRASAKAEVGEVPVNVDGNVRNGGSRKEVEDDRGSRPRRRSSRPNPRSSNPPKHVHGEQVAAGWPSWLSAVAGEAINGWIPRRADSFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPGIKFTEPQVKCYMNQLLSGLEHCHNRHVLHRDIKGSNLLIDNGGILKIADFGLASVFDPNHKQPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTEEYWKKSRLPHATIFKPQHSYKRCISETFKDFPPSSLPLIETLLAIDPAERLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNADGVKKARARDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSHHVDPIYDPPDVPFSTMNFSYPKANIQTWSGPLMDPAAVGAPRRKKHTAGHSSKSSDLRKDKNSARI 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6765851 6768916 - Lag0021355.1 Lac7g0838 613739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0838 564 CDD STKc_CDK9_like 109 393 - -
Lac7g0838 564 MobiDBLite consensus disorder prediction 45 61 - -
Lac7g0838 564 MobiDBLite consensus disorder prediction 548 564 - -
Lac7g0838 564 MobiDBLite consensus disorder prediction 10 28 - -
Lac7g0838 564 ProSiteProfiles Protein kinase domain profile. 109 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac7g0838 564 MobiDBLite consensus disorder prediction 1 81 - -
Lac7g0838 564 Pfam Protein kinase domain 109 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac7g0838 564 SUPERFAMILY Protein kinase-like (PK-like) 102 398 IPR011009 -
Lac7g0838 564 Gene3D Phosphorylase Kinase; domain 1 96 191 - -
Lac7g0838 564 SMART serkin_6 109 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac7g0838 564 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac7g0838 564 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524(InterPro)
Lac7g0838 564 FunFam probable serine/threonine-protein kinase At1g54610 192 433 - -
Lac7g0838 564 MobiDBLite consensus disorder prediction 473 494 - -
Lac7g0838 564 PANTHER CELL DIVISION PROTEIN KINASE 108 393 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Lac7g0838 564 Gene3D Transferase(Phosphotransferase) domain 1 192 432 - -
Lac7g0838 564 FunFam probable serine/threonine-protein kinase At1g54610 96 191 - -
Lac7g0838 564 MobiDBLite consensus disorder prediction 527 564 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0120 Lac-Chr10:912014 Lac7g0838 Lac-Chr7:6765851 1.40E-157 dispersed
Lac10g0606 Lac-Chr10:4651684 Lac7g0838 Lac-Chr7:6765851 2.00E-199 dispersed
Lac1g2429 Lac-Chr1:45756435 Lac7g0838 Lac-Chr7:6765851 1.60E-119 dispersed
Lac2g2314 Lac-Chr2:31681395 Lac7g0838 Lac-Chr7:6765851 4.50E-122 dispersed
Lac5g2461 Lac-Chr5:43197045 Lac7g0838 Lac-Chr7:6765851 1.10E-181 dispersed
Lac6g2719 Lac-Chr6:44960971 Lac7g0838 Lac-Chr7:6765851 7.60E-223 dispersed
Lac7g0838 Lac-Chr7:6765851 Lac9g2169 Lac-Chr9:41161338 3.00E-163 dispersed
Lac7g0838 Lac-Chr7:6765851 Lac3g2293 Lac-Chr3:31237655 2.10E-233 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86327 PF00069 Pkinase 1.20E-68 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0838 K08819 - csv:101217952 1016.91