Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac7g0858 | ATGAAGCCGTACGGTCAGTCTATGGAAGGCTCTCAGTCCGATCCGTCGCCGGAATGGACCGCTTCCGGACCCGATACACCCCATGGAGACCCGCTTTGGCCCTTGGGATCCAGGGAACGGGAATCGTACCCTGAACGGCCTGAAGAGGCCGATTGTATATACTATCTACGTACCGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCTCGGGAGCGTGGCGCGGTTTTGGGAGGTTCCAGACCTGGTGGAAGAGACTATCCCGAACGAGTAGGGCAGCCTGTGTGCCAGTATTATATGAGGACAGGAATGTGCAAATTTGGTGCTTCCTGTAAGTATCACCATCCTCAGCAGGAAAAAGGTTCTCTCAGCCCTGTGTCGCTGAATTTCTATGGCTACCCACTAAGGCCGGGTGAAAAGGAGTGCTCTTATTATTTGAAGAATGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCATCACCCCGAACCGGTGGGCTTGCAGTTTCCAGCACCATCACCCGTTCAGGTTACACCAGTGCCAGCTCCAGTCCCTGCACCCTCTGTTTATCCTCCTGTGCAGTCTCCATCTGCTCATTCGTCACAACAATATGGAGTAATACTTGCAAGGTCTCCATTGCTGCCGAGCCCATATGTTCATGGCCCTTATGGTCCTATGTTGGTTTCCCCAGGGGTTGTTCAATTCCCAAGTTGGAGTCCTTACCCAGCACCTATGAGTCCAGTAGCCTCTCCTAGTGCTCAACCTTCTGTTGGATCGGGGCAACTTTATGGTATGGCACAAGTTTCGCCTTCTGCACCTGCCTATGCAGGATCTTATCAGCCCATGCCTTCTGCTGGTCCGTCAAGTACTAGCCAGAAGGAGCACTCATTTCCAGACAGACCTGGCCAACCAGAGTGCCAATATTACATGAGAACAGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCGCCAGAATTGGTTACTTCAAGGTCAAGTGTTGTCCTTAGCCAACTAGGTCTTCCTCTACGCCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATGTGTAAGTTTGGCCCTGCATGCAAATTTGACCACTCGATGGAACGACTTAGTTACAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCCTACCCTGTGGGATCGGTAGTCGGTACTTTAGCCCCATCATCCTCATCCTCAGAGTTGAGGCCTGAACAATTTTCAGGATCCAGAAAGGATTCTAACCCTTCAAGAATGTCTTCATCAATGAGCACCTCTAGTGGATTGGTCGGTTCAACTACATCAAGGACAGAAATGCCTTCTCATTCAAGTGTTCAACGGTCTTCTCAAAGTTCTGGTCCGTCGGTGAGCAGTACCTCCAGCACCACCAGTGTGGAGGGTCGTACTTGA | 1443 | 50.59 | MKPYGQSMEGSQSDPSPEWTASGPDTPHGDPLWPLGSRERESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERGAVLGGSRPGGRDYPERVGQPVCQYYMRTGMCKFGASCKYHHPQQEKGSLSPVSLNFYGYPLRPGEKECSYYLKNGQCKFGATCKFHHPEPVGLQFPAPSPVQVTPVPAPVPAPSVYPPVQSPSAHSSQQYGVILARSPLLPSPYVHGPYGPMLVSPGVVQFPSWSPYPAPMSPVASPSAQPSVGSGQLYGMAQVSPSAPAYAGSYQPMPSAGPSSTSQKEHSFPDRPGQPECQYYMRTGDCKFGSSCRYHHPPELVTSRSSVVLSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMERLSYSPSASSLADMPVAPYPVGSVVGTLAPSSSSSELRPEQFSGSRKDSNPSRMSSSMSTSSGLVGSTTSRTEMPSHSSVQRSSQSSGPSVSSTSSTTSVEGRT | 480 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 6974025 | 6977404 | - | Lag0021375.1 | Lac7g0858 | 613759 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac7g0858 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 138 | 166 | IPR000571 | GO:0046872(InterPro) | |
| Lac7g0858 | 480 | Gene3D | - | 346 | 394 | - | - | |
| Lac7g0858 | 480 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 350 | 375 | IPR000571 | GO:0046872(InterPro) | |
| Lac7g0858 | 480 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 48 | 73 | IPR000571 | GO:0046872(InterPro) | |
| Lac7g0858 | 480 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 303 | 329 | IPR000571 | GO:0046872(InterPro) | |
| Lac7g0858 | 480 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 95 | 119 | IPR000571 | GO:0046872(InterPro) | |
| Lac7g0858 | 480 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 140 | 165 | IPR000571 | GO:0046872(InterPro) | |
| Lac7g0858 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 92 | 120 | IPR000571 | GO:0046872(InterPro) | |
| Lac7g0858 | 480 | SUPERFAMILY | CCCH zinc finger | 307 | 329 | IPR036855 | GO:0046872(InterPro) | |
| Lac7g0858 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 46 | 74 | IPR000571 | GO:0046872(InterPro) | |
| Lac7g0858 | 480 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
| Lac7g0858 | 480 | SUPERFAMILY | CCCH zinc finger | 48 | 74 | IPR036855 | GO:0046872(InterPro) | |
| Lac7g0858 | 480 | SUPERFAMILY | CCCH zinc finger | 140 | 165 | IPR036855 | GO:0046872(InterPro) | |
| Lac7g0858 | 480 | MobiDBLite | consensus disorder prediction | 278 | 305 | - | - | |
| Lac7g0858 | 480 | Gene3D | - | 125 | 172 | - | - | |
| Lac7g0858 | 480 | Gene3D | - | 286 | 339 | - | - | |
| Lac7g0858 | 480 | SUPERFAMILY | CCCH zinc finger | 95 | 121 | IPR036855 | GO:0046872(InterPro) | |
| Lac7g0858 | 480 | PANTHER | PROTEIN PHOSPHATASE RELATED | 38 | 376 | IPR050974 | GO:0003729(PANTHER) | |
| Lac7g0858 | 480 | SUPERFAMILY | CCCH zinc finger | 352 | 379 | IPR036855 | GO:0046872(InterPro) | |
| Lac7g0858 | 480 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Lac7g0858 | 480 | MobiDBLite | consensus disorder prediction | 284 | 299 | - | - | |
| Lac7g0858 | 480 | FunFam | CCCH type zinc finger protein | 300 | 385 | - | - | |
| Lac7g0858 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 348 | 376 | IPR000571 | GO:0046872(InterPro) | |
| Lac7g0858 | 480 | MobiDBLite | consensus disorder prediction | 404 | 480 | - | - | |
| Lac7g0858 | 480 | Gene3D | - | 44 | 124 | - | - | |
| Lac7g0858 | 480 | SMART | c3hfinal6 | 46 | 73 | IPR000571 | GO:0046872(InterPro) | |
| Lac7g0858 | 480 | SMART | c3hfinal6 | 348 | 375 | IPR000571 | GO:0046872(InterPro) | |
| Lac7g0858 | 480 | SMART | c3hfinal6 | 138 | 165 | IPR000571 | GO:0046872(InterPro) | |
| Lac7g0858 | 480 | SMART | c3hfinal6 | 92 | 119 | IPR000571 | GO:0046872(InterPro) | |
| Lac7g0858 | 480 | SMART | c3hfinal6 | 302 | 329 | IPR000571 | GO:0046872(InterPro) | |
| Lac7g0858 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 302 | 330 | IPR000571 | GO:0046872(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac3g1698 | Lac-Chr3:17058112 | Lac7g0858 | Lac-Chr7:6974025 | 1.80E-24 | dispersed | |
| Lac7g0858 | Lac-Chr7:6974025 | Lac9g2223 | Lac-Chr9:41657900 | 2.80E-16 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 24164 | PF00642 | zf-CCCH | 1.30E-07 | CL0537 | Lac | TF |
Pathway information