Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0858 ATGAAGCCGTACGGTCAGTCTATGGAAGGCTCTCAGTCCGATCCGTCGCCGGAATGGACCGCTTCCGGACCCGATACACCCCATGGAGACCCGCTTTGGCCCTTGGGATCCAGGGAACGGGAATCGTACCCTGAACGGCCTGAAGAGGCCGATTGTATATACTATCTACGTACCGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCTCGGGAGCGTGGCGCGGTTTTGGGAGGTTCCAGACCTGGTGGAAGAGACTATCCCGAACGAGTAGGGCAGCCTGTGTGCCAGTATTATATGAGGACAGGAATGTGCAAATTTGGTGCTTCCTGTAAGTATCACCATCCTCAGCAGGAAAAAGGTTCTCTCAGCCCTGTGTCGCTGAATTTCTATGGCTACCCACTAAGGCCGGGTGAAAAGGAGTGCTCTTATTATTTGAAGAATGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCATCACCCCGAACCGGTGGGCTTGCAGTTTCCAGCACCATCACCCGTTCAGGTTACACCAGTGCCAGCTCCAGTCCCTGCACCCTCTGTTTATCCTCCTGTGCAGTCTCCATCTGCTCATTCGTCACAACAATATGGAGTAATACTTGCAAGGTCTCCATTGCTGCCGAGCCCATATGTTCATGGCCCTTATGGTCCTATGTTGGTTTCCCCAGGGGTTGTTCAATTCCCAAGTTGGAGTCCTTACCCAGCACCTATGAGTCCAGTAGCCTCTCCTAGTGCTCAACCTTCTGTTGGATCGGGGCAACTTTATGGTATGGCACAAGTTTCGCCTTCTGCACCTGCCTATGCAGGATCTTATCAGCCCATGCCTTCTGCTGGTCCGTCAAGTACTAGCCAGAAGGAGCACTCATTTCCAGACAGACCTGGCCAACCAGAGTGCCAATATTACATGAGAACAGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCGCCAGAATTGGTTACTTCAAGGTCAAGTGTTGTCCTTAGCCAACTAGGTCTTCCTCTACGCCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATGTGTAAGTTTGGCCCTGCATGCAAATTTGACCACTCGATGGAACGACTTAGTTACAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCCTACCCTGTGGGATCGGTAGTCGGTACTTTAGCCCCATCATCCTCATCCTCAGAGTTGAGGCCTGAACAATTTTCAGGATCCAGAAAGGATTCTAACCCTTCAAGAATGTCTTCATCAATGAGCACCTCTAGTGGATTGGTCGGTTCAACTACATCAAGGACAGAAATGCCTTCTCATTCAAGTGTTCAACGGTCTTCTCAAAGTTCTGGTCCGTCGGTGAGCAGTACCTCCAGCACCACCAGTGTGGAGGGTCGTACTTGA 1443 50.59 MKPYGQSMEGSQSDPSPEWTASGPDTPHGDPLWPLGSRERESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERGAVLGGSRPGGRDYPERVGQPVCQYYMRTGMCKFGASCKYHHPQQEKGSLSPVSLNFYGYPLRPGEKECSYYLKNGQCKFGATCKFHHPEPVGLQFPAPSPVQVTPVPAPVPAPSVYPPVQSPSAHSSQQYGVILARSPLLPSPYVHGPYGPMLVSPGVVQFPSWSPYPAPMSPVASPSAQPSVGSGQLYGMAQVSPSAPAYAGSYQPMPSAGPSSTSQKEHSFPDRPGQPECQYYMRTGDCKFGSSCRYHHPPELVTSRSSVVLSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMERLSYSPSASSLADMPVAPYPVGSVVGTLAPSSSSSELRPEQFSGSRKDSNPSRMSSSMSTSSGLVGSTTSRTEMPSHSSVQRSSQSSGPSVSSTSSTTSVEGRT 480
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 6974025 6977404 - Lag0021375.1 Lac7g0858 613759
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0858 480 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872(InterPro)
Lac7g0858 480 Gene3D - 346 394 - -
Lac7g0858 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 350 375 IPR000571 GO:0046872(InterPro)
Lac7g0858 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872(InterPro)
Lac7g0858 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 329 IPR000571 GO:0046872(InterPro)
Lac7g0858 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872(InterPro)
Lac7g0858 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 165 IPR000571 GO:0046872(InterPro)
Lac7g0858 480 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872(InterPro)
Lac7g0858 480 SUPERFAMILY CCCH zinc finger 307 329 IPR036855 GO:0046872(InterPro)
Lac7g0858 480 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872(InterPro)
Lac7g0858 480 MobiDBLite consensus disorder prediction 1 44 - -
Lac7g0858 480 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872(InterPro)
Lac7g0858 480 SUPERFAMILY CCCH zinc finger 140 165 IPR036855 GO:0046872(InterPro)
Lac7g0858 480 MobiDBLite consensus disorder prediction 278 305 - -
Lac7g0858 480 Gene3D - 125 172 - -
Lac7g0858 480 Gene3D - 286 339 - -
Lac7g0858 480 SUPERFAMILY CCCH zinc finger 95 121 IPR036855 GO:0046872(InterPro)
Lac7g0858 480 PANTHER PROTEIN PHOSPHATASE RELATED 38 376 IPR050974 GO:0003729(PANTHER)
Lac7g0858 480 SUPERFAMILY CCCH zinc finger 352 379 IPR036855 GO:0046872(InterPro)
Lac7g0858 480 MobiDBLite consensus disorder prediction 1 20 - -
Lac7g0858 480 MobiDBLite consensus disorder prediction 284 299 - -
Lac7g0858 480 FunFam CCCH type zinc finger protein 300 385 - -
Lac7g0858 480 ProSiteProfiles Zinc finger C3H1-type profile. 348 376 IPR000571 GO:0046872(InterPro)
Lac7g0858 480 MobiDBLite consensus disorder prediction 404 480 - -
Lac7g0858 480 Gene3D - 44 124 - -
Lac7g0858 480 SMART c3hfinal6 46 73 IPR000571 GO:0046872(InterPro)
Lac7g0858 480 SMART c3hfinal6 348 375 IPR000571 GO:0046872(InterPro)
Lac7g0858 480 SMART c3hfinal6 138 165 IPR000571 GO:0046872(InterPro)
Lac7g0858 480 SMART c3hfinal6 92 119 IPR000571 GO:0046872(InterPro)
Lac7g0858 480 SMART c3hfinal6 302 329 IPR000571 GO:0046872(InterPro)
Lac7g0858 480 ProSiteProfiles Zinc finger C3H1-type profile. 302 330 IPR000571 GO:0046872(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1698 Lac-Chr3:17058112 Lac7g0858 Lac-Chr7:6974025 1.80E-24 dispersed
Lac7g0858 Lac-Chr7:6974025 Lac9g2223 Lac-Chr9:41657900 2.80E-16 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24164 PF00642 zf-CCCH 1.30E-07 CL0537 Lac TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0858 - - - 0.0