Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0905 ATGGCAGATGGAGGAAAGAACAAGAAGGCTGCCCTCATCCGCGTGTCTTCATTGTTTCTTGTTACCATGGTAGTTGCAGTGGCGGTGGCTGACAACCCCAAAGGCGGTGGCGCCACCGCGGAGACCTCCAACACCACTAAATCTGTTAGAGCTGTTTGTCAGTCCACTGATTACCAAGAAACTTGCGAGAACGCACTCGCGGAGGCCGGAAAAAACACGAGCGACCCACGTGTACTAATCAAGGCAGGATTCCACGCTGCTGTTGAACAAATCAGATCGGCCATTGGAAATTCAACCCTCTTGAAAGAATCTGCCAAAGATCCCATGGCCAAGCTAGCACTCGAAGATTGCGGTGAACTCATGGATTATGCAATCGACGATCTTGTAACTTCGTTCGACAGGGTCACCGATAATTTCGATTTCAGCAAACTGAATGAATACATCGAGGATCTCAAGATCTGGCTAAGTGGGGCATTAACGTATCAAGAAACTTGTTTGGATGGATTTGAGAATGTTACTGGTGATACAGGGGAAAAGATGCAGAATTTGTTGAAGACGTCAAGAGAATTGACAATCAATGGGCTTGATATGGTGAGTGAGATCTCGTCCGTTTTGACCTCTTTATGGCTTCCGATGGCTGGACGACGACTGTTGACAGAAGAGGAATCCAATGAACGACTGCTGACAGAGGACGAGCCATCATGGGTCAGTGACAGAAGGGGGCTACTCCAAGCCACTCCAGCCAACATCAAAGCAGACGTTGTGGTGGCTATAGATGGAAGTGGCAAGTACAAAACAGTGAGTGAAGCTCTAAAGGATGTCCCAAAGAACAGCAATAAAACCTTTGTCATTTATATTAAGGCCGGAGTTTATCAAGAGCAAGTGATGGTCGACAAGACCATGACCTATGTCATGATGATTGGAGATGGCCCGACTAAGACGAAGATCACTGCATCCAAGAACTTCGTCGACGGAACACCCAGATTCAAAACCGCTACTGTTTCGGTGATGGGGACCAACTTCATCGCCAAAGACATAGGATTCGAGAACTCTGCGGGAGCAGCGAAGCGCCAAGCAGCAGCACTCCAAGTCCAATCTGACATGTCCATCTTCTACAATTGTCAAATGGATGGTTACCAAGACACTCTCTACACTCACGTCCACCGCCAATTCTACCGAGATTGCACCATCACCGGCACCATCGACTTCATCTTTGGCAACGCGGCTGTTGTGTTCCAAAATTGCAAGATCTTAGTGAGGAAGCCAATGGATGATCAACAATGCATCATTACTGCCCAAGGTCGAACCCAACCAAAAGAGCCCACTGCCATCATCCTTCAGAATTGTGTCATCTCCTCCGCTCCTGATTTCTTCCCCGTCCGTCACATCAACAAGGCCTACCTTGGACGCCCATGGAAGGAATATTCAAGAACCATCATTATGCAGTCCCAAATCGACGACTTGATTCAGCCTGAAGGATGGCTTCCATGGCAAGGTGATTTTGCTCTGAAAACTCTGTTTTACTCCGAGTTCAATAATAGGGGACCTGGTGCCGCCAAGGACAAACGAGTTAAGTGGAGGGGAATCAAGCAAATCACAGCACAGCACGCCGTTGATTTCACCGTCGGGAGGTTTATTAATGGTGATCACTGGATCAAGCCCACCGGAGTGCCATACACTTCCGACATGATGGCAGTGTAA 1701 48.15 MADGGKNKKAALIRVSSLFLVTMVVAVAVADNPKGGGATAETSNTTKSVRAVCQSTDYQETCENALAEAGKNTSDPRVLIKAGFHAAVEQIRSAIGNSTLLKESAKDPMAKLALEDCGELMDYAIDDLVTSFDRVTDNFDFSKLNEYIEDLKIWLSGALTYQETCLDGFENVTGDTGEKMQNLLKTSRELTINGLDMVSEISSVLTSLWLPMAGRRLLTEEESNERLLTEDEPSWVSDRRGLLQATPANIKADVVVAIDGSGKYKTVSEALKDVPKNSNKTFVIYIKAGVYQEQVMVDKTMTYVMMIGDGPTKTKITASKNFVDGTPRFKTATVSVMGTNFIAKDIGFENSAGAAKRQAAALQVQSDMSIFYNCQMDGYQDTLYTHVHRQFYRDCTITGTIDFIFGNAAVVFQNCKILVRKPMDDQQCIITAQGRTQPKEPTAIILQNCVISSAPDFFPVRHINKAYLGRPWKEYSRTIIMQSQIDDLIQPEGWLPWQGDFALKTLFYSEFNNRGPGAAKDKRVKWRGIKQITAQHAVDFTVGRFINGDHWIKPTGVPYTSDMMAV 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7568420 7570120 - Lag0021422.1 Lac7g0905 613806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0905 566 Gene3D - 247 563 IPR012334 -
Lac7g0905 566 NCBIfam pectinesterase inhibitor domain 19 185 IPR006501 GO:0004857(InterPro)
Lac7g0905 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 47 201 IPR035513 -
Lac7g0905 566 SMART PMEI_2 44 197 IPR006501 GO:0004857(InterPro)
Lac7g0905 566 ProSitePatterns Pectinesterase signature 1. 278 297 IPR018040 -
Lac7g0905 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 43 202 IPR035513 -
Lac7g0905 566 Pfam Plant invertase/pectin methylesterase inhibitor 48 197 IPR006501 GO:0004857(InterPro)
Lac7g0905 566 CDD PMEI-like_3 51 203 - -
Lac7g0905 566 Pfam Pectinesterase 253 549 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac7g0905 566 FunFam Pectinesterase 45 202 - -
Lac7g0905 566 FunFam Pectinesterase 247 563 - -
Lac7g0905 566 PANTHER PECTINESTERASE 9 554 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lac7g0905 566 SUPERFAMILY Pectin lyase-like 250 561 IPR011050 -
Lac7g0905 566 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0857 Lac-Chr11:9235100 Lac7g0905 Lac-Chr7:7568420 1.60E-196 dispersed
Lac11g0858 Lac-Chr11:9241488 Lac7g0905 Lac-Chr7:7568420 2.60E-202 dispersed
Lac3g2866 Lac-Chr3:45706899 Lac7g0905 Lac-Chr7:7568420 5.40E-176 dispersed
Lac7g0905 Lac-Chr7:7568420 Lac8g2163 Lac-Chr8:39965811 5.60E-117 dispersed
Lac7g0905 Lac-Chr7:7568420 Lac7g0908 Lac-Chr7:7581233 8.60E-243 proximal
Lac10g1173 Lac-Chr10:9941960 Lac7g0905 Lac-Chr7:7568420 3.20E-112 transposed
Lac12g2053 Lac-Chr12:37630899 Lac7g0905 Lac-Chr7:7568420 4.30E-16 transposed
Lac7g0905 Lac-Chr7:7568420 Lac8g1608 Lac-Chr8:33949093 1.40E-11 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0905 K01051 - csv:101212686 917.531