Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0908 ATGGGAGATGATGGAGGGAAGAACAATAAGGCTGCCCTCATCGGCGTCTCTTCATTGTTTCTTGTTGCCATGGTAGTTGCTGTGGCGGTCGGCGTCAACCGCAAAGGCACCGATGACGACATTGGTGGTGGTGGTGGCGGCGGCGGCGGCGCTACAACAACAGCGGAGATCTCCACCTCCTCTAAAGCGGTTAAAGCTCTTTGTCAGCCCACTGATTACCAACAAACTTGCGAGAAAGCCCTCGCGGAGGCCGGTAAAGACACAAGCGACCCACGCGAACTAATCAAGGCAGGATTTAACGTTGCTGTCGAACAAATCAGATCGGCCATTGGAAATTCAACCCTCTTGAAAGAATCTGCCAAAGATCCCATGGCCAAGAAAGCACTTGACGGTTGCGGTGAGCTCATGGATTATGCAATCGACGATCTTGAAACTTCGTTCTACAGGATCACCGATGACTTTGATATCACCAAACTAGATGATTACATCGAGGATCTCAAGATTTGGCTAAGTGGGGCATTGTCGTATCAAGAAACTTGTTTGGATGGATTTGAGAATGTTAAAGGTGATATAGGGGAAAAGATGCAGAAATTGTTGAAGATGTCAAGGGAATTGACAATCAATGGGCTTGGGATGGTGAGTGAGGTCATGTCCATTTTGACCTCTTTTGGGTTTCCGTTGCCTGGACGGCGATTGCTGACAAAGGAATCTGATGAACAAAGGGAAGAGCCATCATGGGTTAGTGACAGAAGGGGATACTCCAAGCCACTCCAGCCAACATCAAACCCAACGTTGTGGTGGCTAAAGATGGAAGTGGCAAGAATTTATCAAGAGCAAGTGATGGTCGAAAAGAGTAAGACTTATGTCATGATGATTGGAGATGGCCCGACTAAGACAAAGATCACTGCGTCCAAGAACTTCATCGACGGAACGCCGACATTCAAAACCGCTACTGTTTCGGTGATCGGGAGCAACTTCATCGCCAAAAACATAGGGTTTGAGAACTCGGCAGGATCAGCGAAGCACCAAGCAGTGGCACTTCGAGTTCAATCTGACATGTCCATCTTCTACAATTGTCAAATGGATGGTTACCAAGACACTCTCTACACTCACGCCCACCGCCAATTCTACCGAGATTGCACCATCACCGGCACCATCGACTTCATCTTTGGCAACGCGGCTGTTGTGTTCCAGAATTGCAAGATCTTAGTGAGGAAGCCAATGCAAAATCAACAATGCATCGTTACTGCCCAAGGCCGAACCCAGCGAAAAGAGCCCACTGCCATCATCCTTCAGAATTGCGTCATCTCATCTGCTCCTGATTTCTTCCCCGTCCGTCACATCAACAAGGCCTACCTTGGACGCCCATGGAAGGAATATTCAAGAACCATCATTATGCAGTCCCAAATCGACGACTTGATTCAGCCTGAAGGATGGCTTCCATGGCAAGGTGATTTTGCTTTGAAAACTCTGTTTTACACAGAGTACAATAACAGGGGACCTGGTGCCAACAAGGAGAAGCGAGTGAAGTGGAGGGGAATTAAGCAAATCACACCAGAGCACGCCGTCGATTTCACCATTAGGAGATTTATTCGTGGTGATCATTGGATCAAGCCCACCGGAGTGCCATACACTCCCGGCATGATGACAGTGTAA 1656 48.25 MGDDGGKNNKAALIGVSSLFLVAMVVAVAVGVNRKGTDDDIGGGGGGGGGATTTAEISTSSKAVKALCQPTDYQQTCEKALAEAGKDTSDPRELIKAGFNVAVEQIRSAIGNSTLLKESAKDPMAKKALDGCGELMDYAIDDLETSFYRITDDFDITKLDDYIEDLKIWLSGALSYQETCLDGFENVKGDIGEKMQKLLKMSRELTINGLGMVSEVMSILTSFGFPLPGRRLLTKESDEQREEPSWVSDRRGYSKPLQPTSNPTLWWLKMEVARIYQEQVMVEKSKTYVMMIGDGPTKTKITASKNFIDGTPTFKTATVSVIGSNFIAKNIGFENSAGSAKHQAVALRVQSDMSIFYNCQMDGYQDTLYTHAHRQFYRDCTITGTIDFIFGNAAVVFQNCKILVRKPMQNQQCIVTAQGRTQRKEPTAIILQNCVISSAPDFFPVRHINKAYLGRPWKEYSRTIIMQSQIDDLIQPEGWLPWQGDFALKTLFYTEYNNRGPGANKEKRVKWRGIKQITPEHAVDFTIRRFIRGDHWIKPTGVPYTPGMMTV 551
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 7581233 7582965 - Lag0021425.1 Lac7g0908 613809
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0908 551 MobiDBLite consensus disorder prediction 234 249 - -
Lac7g0908 551 FunFam Pectinesterase 60 217 - -
Lac7g0908 551 Pfam Pectinesterase 275 534 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac7g0908 551 PANTHER PECTINESTERASE 10 539 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lac7g0908 551 ProSitePatterns Pectinesterase signature 2. 382 391 IPR033131 -
Lac7g0908 551 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 216 IPR035513 -
Lac7g0908 551 SUPERFAMILY Pectin lyase-like 275 547 IPR011050 -
Lac7g0908 551 CDD PMEI-like_3 66 215 - -
Lac7g0908 551 FunFam Pectinesterase 268 548 - -
Lac7g0908 551 Gene3D - 272 548 IPR012334 -
Lac7g0908 551 NCBIfam pectinesterase inhibitor domain 59 196 IPR006501 GO:0004857(InterPro)
Lac7g0908 551 MobiDBLite consensus disorder prediction 234 255 - -
Lac7g0908 551 SMART PMEI_2 59 212 IPR006501 GO:0004857(InterPro)
Lac7g0908 551 Gene3D Invertase/pectin methylesterase inhibitor family protein 58 216 IPR035513 -
Lac7g0908 551 Pfam Plant invertase/pectin methylesterase inhibitor 63 210 IPR006501 GO:0004857(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2053 Lac-Chr12:37630899 Lac7g0908 Lac-Chr7:7581233 2.10E-15 dispersed
Lac5g1410 Lac-Chr5:28299866 Lac7g0908 Lac-Chr7:7581233 3.00E-43 dispersed
Lac7g0908 Lac-Chr7:7581233 Lac8g2163 Lac-Chr8:39965811 8.70E-107 dispersed
Lac7g0905 Lac-Chr7:7568420 Lac7g0908 Lac-Chr7:7581233 8.60E-243 proximal
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0908 K01051 - csv:101212686 853.973