Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac7g0908 | ATGGGAGATGATGGAGGGAAGAACAATAAGGCTGCCCTCATCGGCGTCTCTTCATTGTTTCTTGTTGCCATGGTAGTTGCTGTGGCGGTCGGCGTCAACCGCAAAGGCACCGATGACGACATTGGTGGTGGTGGTGGCGGCGGCGGCGGCGCTACAACAACAGCGGAGATCTCCACCTCCTCTAAAGCGGTTAAAGCTCTTTGTCAGCCCACTGATTACCAACAAACTTGCGAGAAAGCCCTCGCGGAGGCCGGTAAAGACACAAGCGACCCACGCGAACTAATCAAGGCAGGATTTAACGTTGCTGTCGAACAAATCAGATCGGCCATTGGAAATTCAACCCTCTTGAAAGAATCTGCCAAAGATCCCATGGCCAAGAAAGCACTTGACGGTTGCGGTGAGCTCATGGATTATGCAATCGACGATCTTGAAACTTCGTTCTACAGGATCACCGATGACTTTGATATCACCAAACTAGATGATTACATCGAGGATCTCAAGATTTGGCTAAGTGGGGCATTGTCGTATCAAGAAACTTGTTTGGATGGATTTGAGAATGTTAAAGGTGATATAGGGGAAAAGATGCAGAAATTGTTGAAGATGTCAAGGGAATTGACAATCAATGGGCTTGGGATGGTGAGTGAGGTCATGTCCATTTTGACCTCTTTTGGGTTTCCGTTGCCTGGACGGCGATTGCTGACAAAGGAATCTGATGAACAAAGGGAAGAGCCATCATGGGTTAGTGACAGAAGGGGATACTCCAAGCCACTCCAGCCAACATCAAACCCAACGTTGTGGTGGCTAAAGATGGAAGTGGCAAGAATTTATCAAGAGCAAGTGATGGTCGAAAAGAGTAAGACTTATGTCATGATGATTGGAGATGGCCCGACTAAGACAAAGATCACTGCGTCCAAGAACTTCATCGACGGAACGCCGACATTCAAAACCGCTACTGTTTCGGTGATCGGGAGCAACTTCATCGCCAAAAACATAGGGTTTGAGAACTCGGCAGGATCAGCGAAGCACCAAGCAGTGGCACTTCGAGTTCAATCTGACATGTCCATCTTCTACAATTGTCAAATGGATGGTTACCAAGACACTCTCTACACTCACGCCCACCGCCAATTCTACCGAGATTGCACCATCACCGGCACCATCGACTTCATCTTTGGCAACGCGGCTGTTGTGTTCCAGAATTGCAAGATCTTAGTGAGGAAGCCAATGCAAAATCAACAATGCATCGTTACTGCCCAAGGCCGAACCCAGCGAAAAGAGCCCACTGCCATCATCCTTCAGAATTGCGTCATCTCATCTGCTCCTGATTTCTTCCCCGTCCGTCACATCAACAAGGCCTACCTTGGACGCCCATGGAAGGAATATTCAAGAACCATCATTATGCAGTCCCAAATCGACGACTTGATTCAGCCTGAAGGATGGCTTCCATGGCAAGGTGATTTTGCTTTGAAAACTCTGTTTTACACAGAGTACAATAACAGGGGACCTGGTGCCAACAAGGAGAAGCGAGTGAAGTGGAGGGGAATTAAGCAAATCACACCAGAGCACGCCGTCGATTTCACCATTAGGAGATTTATTCGTGGTGATCATTGGATCAAGCCCACCGGAGTGCCATACACTCCCGGCATGATGACAGTGTAA | 1656 | 48.25 | MGDDGGKNNKAALIGVSSLFLVAMVVAVAVGVNRKGTDDDIGGGGGGGGGATTTAEISTSSKAVKALCQPTDYQQTCEKALAEAGKDTSDPRELIKAGFNVAVEQIRSAIGNSTLLKESAKDPMAKKALDGCGELMDYAIDDLETSFYRITDDFDITKLDDYIEDLKIWLSGALSYQETCLDGFENVKGDIGEKMQKLLKMSRELTINGLGMVSEVMSILTSFGFPLPGRRLLTKESDEQREEPSWVSDRRGYSKPLQPTSNPTLWWLKMEVARIYQEQVMVEKSKTYVMMIGDGPTKTKITASKNFIDGTPTFKTATVSVIGSNFIAKNIGFENSAGSAKHQAVALRVQSDMSIFYNCQMDGYQDTLYTHAHRQFYRDCTITGTIDFIFGNAAVVFQNCKILVRKPMQNQQCIVTAQGRTQRKEPTAIILQNCVISSAPDFFPVRHINKAYLGRPWKEYSRTIIMQSQIDDLIQPEGWLPWQGDFALKTLFYTEYNNRGPGANKEKRVKWRGIKQITPEHAVDFTIRRFIRGDHWIKPTGVPYTPGMMTV | 551 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 7581233 | 7582965 | - | Lag0021425.1 | Lac7g0908 | 613809 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac7g0908 | 551 | MobiDBLite | consensus disorder prediction | 234 | 249 | - | - | |
| Lac7g0908 | 551 | FunFam | Pectinesterase | 60 | 217 | - | - | |
| Lac7g0908 | 551 | Pfam | Pectinesterase | 275 | 534 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
| Lac7g0908 | 551 | PANTHER | PECTINESTERASE | 10 | 539 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
| Lac7g0908 | 551 | ProSitePatterns | Pectinesterase signature 2. | 382 | 391 | IPR033131 | - | |
| Lac7g0908 | 551 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 62 | 216 | IPR035513 | - | |
| Lac7g0908 | 551 | SUPERFAMILY | Pectin lyase-like | 275 | 547 | IPR011050 | - | |
| Lac7g0908 | 551 | CDD | PMEI-like_3 | 66 | 215 | - | - | |
| Lac7g0908 | 551 | FunFam | Pectinesterase | 268 | 548 | - | - | |
| Lac7g0908 | 551 | Gene3D | - | 272 | 548 | IPR012334 | - | |
| Lac7g0908 | 551 | NCBIfam | pectinesterase inhibitor domain | 59 | 196 | IPR006501 | GO:0004857(InterPro) | |
| Lac7g0908 | 551 | MobiDBLite | consensus disorder prediction | 234 | 255 | - | - | |
| Lac7g0908 | 551 | SMART | PMEI_2 | 59 | 212 | IPR006501 | GO:0004857(InterPro) | |
| Lac7g0908 | 551 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 58 | 216 | IPR035513 | - | |
| Lac7g0908 | 551 | Pfam | Plant invertase/pectin methylesterase inhibitor | 63 | 210 | IPR006501 | GO:0004857(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac12g2053 | Lac-Chr12:37630899 | Lac7g0908 | Lac-Chr7:7581233 | 2.10E-15 | dispersed | |
| Lac5g1410 | Lac-Chr5:28299866 | Lac7g0908 | Lac-Chr7:7581233 | 3.00E-43 | dispersed | |
| Lac7g0908 | Lac-Chr7:7581233 | Lac8g2163 | Lac-Chr8:39965811 | 8.70E-107 | dispersed | |
| Lac7g0905 | Lac-Chr7:7568420 | Lac7g0908 | Lac-Chr7:7581233 | 8.60E-243 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac7g0908 | K01051 | - | csv:101212686 | 853.973 |