Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0922 ATGTCTACGGCCAGTTCGAGCTCTGTGAGGAAGCCCAGTGAAGCTGTTTCCGACCAGTTTCCGGCCGGCCTTCGTGTTCTGGTTGTTGATGATGATCCGACCTGTCTTATGATCTTGGAGAAGATGCTTCGTATTTGTCGCTATGAAGTAACAAAATGTAGCCGAGCCGAGGATGCACTGTCGCTTCTCAGACGGTACAAAAACGGGTTCGATGTCGTTTTGAGCGATGTCCATATGCCTGACATGGATGGATTCAAACTTCTGGAATACATTGGATTGGAAATGGACTTACCTGTAATTATGATGTCGGTGGATGATGGGAAAAACGTCGTCATGAAGGGAGTGACTCATGGTGCTTGTGACTATTTAATAAAACCGGTTCGAATTGAAGCGCTGAAGAACATATGGCAGCATGTTGTTCGCAAACGGAAGAATGAATGGAAAGACTTGGAGCAATCTGGTGTGGAAGATGTAGATCGGCAGCAAAAAACAAATGAAGATGCAGATTATTCATCCTCTGCTAATGAAGGGAGTTGGAGGAACTCAAAGAGGAGGAAGGACGATGTAGAAGATGCCGAGGAGAGGGATGATTCATCGACTTTGAAGAAACCAAGGGTCGTTTGGTCCGTTGAGCTCCATCAACAGTTTGTGGCTGCTGTTAATCAACTAGGAATTGATAAGGCTGTTCCCAAGAAGATTCTGGAGTTGATGAATGTTCCTGGACTCACTAGAGAAAATGTTGCTAGCCACCTTCAGAAATATCGCTTGTACCTGAGAAGAGTGAGTGGAATGGCACAACACCAGAGTAGTTTAAACAACACATTCATGAGTGCCCAAGATGCATTTGGCCCGTCGCTGAACGGGCTTGATCTTCAAACTCTCGCTGCTGCCGGTCAACTTCAGCCACAAAGCCTTGCTACACTCCAAGCAGCTGGATTTGGTAGGTCTACAGCGAAATCGGGAATGCCTATGCCCCTTGTTGATCAAAGGAACCACATTTTTAGCTTTGAAAATCCAAAGTTGAGATTTGGTGATGGGCAACAGCCACATTTGAACGGTAGTAAACCATTGAATCTACTTCACGGAATTCCAACAACAATGGAGCCAAAACAACTTGCTAATCTGCAGCATTCTGCACAATCTCATGGGAACATGACAATGCAAGTTAGTGCCCAAGGAGGCCAAACTAGCTCTCAACTAATGCAGACACCTCAATCACATGCTAGAGCACAGATCCTAAATGATAGTACCTCAACTAGCGTAACAAGGCTTCCAACGACAATACCGCAGTCAATTTTGCCGAATGGAACTGCCAGTACGGTTTTGGCTAGGAATGATTTTGCCAATAACAGCAGAGGTGGTGGGTACAATCTAGTTTCACCAGCCTCGACGATGTTGAATTTTCCCATGAACCAAACTGCCGAACTGCCTGGTAACAGTTTTCCTCTTCAAAGTACCCCAGGAATGTCAAGTATTGTACCGAAGGGAAGATTCCCAGAGGATGTTAACTCAGACATTAAAGGATCTGAAGGTTTTGTGCCAAGCTATGATATGTTTAGGGATCTGCATCCTCAGAAGCCAGATTGGGACTTGCAACATGTCGGCGTGACCTTCGATGCGTCTCAAGGTAGTCTCGACATTCCACCCTCAGCTTTTGCTCATCAAGGGTATGCCTCTAGCCAACAAAATGGACAAAACAGGAATGCATCTACGGCAAGCAAGGCCATGTTCTTGTTGGAAGAAGGAAGTGACAATGGGAATGCACAAAGTATGGGTCAGCAACTCAACCCTCTTTTCGTTGACGGTTCGGTGCGAGTTAAAGCTGAAAGAGCTTCTGATTGTAGCAGCCAAACTGACCTTTTTTCTGAACACTTTGGTCAGGAGGACCTAATGAGTGCACTTCTTAAGCAGCAACAGGGAAGCATTGCAACAGCTGAAAGTGAATTGGAATGGGTATTTCATCATAATACTCCTGTTTAG 1980 45.4 MSTASSSSVRKPSEAVSDQFPAGLRVLVVDDDPTCLMILEKMLRICRYEVTKCSRAEDALSLLRRYKNGFDVVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGVEDVDRQQKTNEDADYSSSANEGSWRNSKRRKDDVEDAEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRVSGMAQHQSSLNNTFMSAQDAFGPSLNGLDLQTLAAAGQLQPQSLATLQAAGFGRSTAKSGMPMPLVDQRNHIFSFENPKLRFGDGQQPHLNGSKPLNLLHGIPTTMEPKQLANLQHSAQSHGNMTMQVSAQGGQTSSQLMQTPQSHARAQILNDSTSTSVTRLPTTIPQSILPNGTASTVLARNDFANNSRGGGYNLVSPASTMLNFPMNQTAELPGNSFPLQSTPGMSSIVPKGRFPEDVNSDIKGSEGFVPSYDMFRDLHPQKPDWDLQHVGVTFDASQGSLDIPPSAFAHQGYASSQQNGQNRNASTASKAMFLLEEGSDNGNAQSMGQQLNPLFVDGSVRVKAERASDCSSQTDLFSEHFGQEDLMSALLKQQQGSIATAESELEWVFHHNTPV 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7732095 7735158 + Lag0021439.1 Lac7g0922 613823

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0922 659 PIRSF RR_ARR_type-B 2 649 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Lac7g0922 659 CDD REC_typeB_ARR-like 26 140 - -
Lac7g0922 659 Gene3D - 200 262 - -
Lac7g0922 659 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Lac7g0922 659 Pfam Myb-like DNA-binding domain 205 255 IPR001005 -
Lac7g0922 659 FunFam Two-component response regulator 199 262 - -
Lac7g0922 659 SUPERFAMILY Homeodomain-like 200 260 IPR009057 -
Lac7g0922 659 MobiDBLite consensus disorder prediction 151 166 - -
Lac7g0922 659 Gene3D - 24 161 - -
Lac7g0922 659 MobiDBLite consensus disorder prediction 151 200 - -
Lac7g0922 659 NCBIfam myb-like DNA-binding domain, SHAQKYF class 203 256 IPR006447 GO:0003677(InterPro)
Lac7g0922 659 SUPERFAMILY CheY-like 23 148 IPR011006 -
Lac7g0922 659 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Lac7g0922 659 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Lac7g0922 659 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 263 IPR045279 GO:0009736(InterPro)
Lac7g0922 659 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 259 IPR017930 -
Lac7g0922 659 MobiDBLite consensus disorder prediction 179 200 - -
Lac7g0922 659 FunFam Two-component response regulator 24 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0922 K14491 - - csv:101209013 1224.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0194 Lac-Chr3:1367917 Lac7g0922 Lac-Chr7:7732095 4.40E-84 dispersed
Lac3g0306 Lac-Chr3:2178269 Lac7g0922 Lac-Chr7:7732095 1.30E-44 dispersed
Lac4g2494 Lac-Chr4:44245865 Lac7g0922 Lac-Chr7:7732095 2.30E-30 dispersed
Lac4g2495 Lac-Chr4:44260895 Lac7g0922 Lac-Chr7:7732095 3.10E-10 dispersed
Lac6g2882 Lac-Chr6:46483755 Lac7g0922 Lac-Chr7:7732095 1.70E-67 dispersed
Lac7g0011 Lac-Chr7:101859 Lac7g0922 Lac-Chr7:7732095 1.80E-14 dispersed
Lac7g0922 Lac-Chr7:7732095 Lac7g2753 Lac-Chr7:46695277 1.70E-19 dispersed
Lac12g1948 Lac-Chr12:36297334 Lac7g0922 Lac-Chr7:7732095 7.90E-37 transposed
Lac5g2898 Lac-Chr5:47156859 Lac7g0922 Lac-Chr7:7732095 1.80E-46 transposed
Lac6g0714 Lac-Chr6:6074972 Lac7g0922 Lac-Chr7:7732095 7.40E-80 transposed
Lac11g0905 Lac-Chr11:9768244 Lac7g0922 Lac-Chr7:7732095 1.80E-215 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0714 . 52 256 Response Regulator Gene Family AT3G16857 53.3 1.6e-53 208.4
Lac3g0194 . 18 386 Response Regulator Gene Family AT4G31920 54.8 1.7e-89 327.8
Lac6g2882 . 17 337 Response Regulator Gene Family AT4G31920 52.7 4.8e-81 299.7
Lac11g0905 . 25 289 Response Regulator Gene Family AT4G31920 52.9 2.0e-71 267.7
Lac7g0922 . 16 270 Response Regulator Gene Family AT4G31920 53.9 2.1e-68 257.7
Lac6g0714 . 11 259 Response Regulator Gene Family AT4G31920 50.8 8.6e-62 235.7
Lac2g0557 . 93 256 Response Regulator Gene Family AT1G67710 53.5 1.2e-40 165.2
Lac7g0922 . 99 261 Response Regulator Gene Family AT1G67710 53.8 9.8e-40 162.2
Lac6g2882 . 17 380 Response Regulator Gene Family AT2G25180 52.8 1.2e-85 315.1
Lac7g0922 . 18 290 Response Regulator Gene Family AT2G25180 54.7 6.0e-77 286.2
Lac6g0714 . 11 256 Response Regulator Gene Family AT2G25180 55.6 3.9e-68 256.9
Lac7g0922 . 79 308 Response Regulator Gene Family AT2G01760 50.4 3.2e-53 206.5
Lac3g0194 . 79 303 Response Regulator Gene Family AT2G01760 53.9 1.8e-48 190.7
Lac6g0714 . 72 259 Response Regulator Gene Family AT2G01760 50.5 1.3e-46 184.5
Lac6g0714 . 9 258 Response Regulator Gene Family AT5G58080 51.4 2.6e-62 237.7
Lac7g0922 . 17 241 Response Regulator Gene Family AT4G16110 67.5 4.9e-80 296.6
Lac11g0905 . 26 251 Response Regulator Gene Family AT4G16110 66.7 2.4e-79 294.3
Lac2g0557 . 11 234 Response Regulator Gene Family AT4G16110 57.8 3.2e-63 240.7
Lac6g0714 . 10 235 Response Regulator Gene Family AT4G16110 54.4 1.4e-58 225.3
Lac3g0194 . 17 249 Response Regulator Gene Family AT4G16110 54.1 1.0e-56 219.2
Lac6g2882 . 18 245 Response Regulator Gene Family AT4G16110 56.8 1.5e-52 205.3
Lac3g0664 . 20 174 Response Regulator Gene Family AT3G48100 71.3 1.9e-53 206.5
Lac13g0242 . 29 162 Response Regulator Gene Family AT3G48100 70.1 2.1e-49 193.0
Lac1g1457 . 10 156 Response Regulator Gene Family AT3G48100 57.1 1.8e-40 163.3
Lac10g2145 . 3 153 Response Regulator Gene Family AT3G48100 55.0 5.3e-40 161.8
Lac13g0750 . 4 165 Response Regulator Gene Family AT3G48100 53.7 1.3e-38 157.1
Lac8g2104 . 11 157 Response Regulator Gene Family AT3G48100 56.5 1.3e-38 157.1
Lac8g1837 . 18 163 Response Regulator Gene Family AT3G48100 56.5 3.8e-38 155.6
Lac13g0242 . 1 201 Response Regulator Gene Family AT1G59940 61.0 9.2e-56 214.9
Lac3g0664 . 22 174 Response Regulator Gene Family AT1G59940 64.1 8.3e-49 191.8
Lac8g2104 . 5 158 Response Regulator Gene Family AT1G59940 57.1 1.4e-40 164.5
Lac10g2145 . 8 151 Response Regulator Gene Family AT1G59940 59.0 5.4e-40 162.5
Lac13g0750 . 9 163 Response Regulator Gene Family AT1G59940 57.4 9.2e-40 161.8
Lac1g1457 . 11 154 Response Regulator Gene Family AT1G59940 56.3 2.7e-39 160.2
Lac13g1253 . 18 149 Response Regulator Gene Family AT1G59940 62.1 1.7e-38 157.5
Lac8g1837 . 2 168 Response Regulator Gene Family AT1G59940 52.4 3.0e-38 156.8
Lac13g0242 . 16 185 Response Regulator Gene Family AT1G10470 65.3 1.6e-52 203.8
Lac3g0664 . 30 160 Response Regulator Gene Family AT1G10470 73.3 1.4e-48 190.7
Lac10g2145 . 10 151 Response Regulator Gene Family AT1G10470 59.2 7.0e-40 161.8
Lac1g1457 . 17 154 Response Regulator Gene Family AT1G10470 60.9 2.7e-39 159.8
Lac8g2104 . 5 163 Response Regulator Gene Family AT1G10470 54.1 2.7e-39 159.8
Lac8g1837 . 18 177 Response Regulator Gene Family AT1G10470 51.6 8.6e-38 154.8
Lac13g0750 . 11 146 Response Regulator Gene Family AT1G10470 60.3 1.9e-37 153.7
Lac13g1253 . 20 149 Response Regulator Gene Family AT1G10470 61.5 2.5e-37 153.3
Lac3g0664 . 20 174 Response Regulator Gene Family AT3G48100 71.3 1.9e-53 206.5
Lac13g0242 . 29 162 Response Regulator Gene Family AT3G48100 70.1 2.1e-49 193.0
Lac1g1457 . 10 156 Response Regulator Gene Family AT3G48100 57.1 1.8e-40 163.3
Lac10g2145 . 3 153 Response Regulator Gene Family AT3G48100 55.0 5.3e-40 161.8
Lac13g0750 . 4 165 Response Regulator Gene Family AT3G48100 53.7 1.3e-38 157.1
Lac8g2104 . 11 157 Response Regulator Gene Family AT3G48100 56.5 1.3e-38 157.1
Lac8g1837 . 18 163 Response Regulator Gene Family AT3G48100 56.5 3.8e-38 155.6
Lac3g0664 . 19 163 Response Regulator Gene Family AT5G62920 72.4 6.1e-52 201.4
Lac13g0242 . 11 175 Response Regulator Gene Family AT5G62920 61.8 5.3e-48 188.3
Lac1g1457 . 12 156 Response Regulator Gene Family AT5G62920 57.9 2.4e-40 162.9
Lac10g2145 . 10 153 Response Regulator Gene Family AT5G62920 56.3 2.6e-39 159.5
Lac8g2104 . 11 157 Response Regulator Gene Family AT5G62920 58.1 2.6e-39 159.5
Lac8g1837 . 18 158 Response Regulator Gene Family AT5G62920 57.7 5.5e-37 151.8
Lac13g0750 . 11 146 Response Regulator Gene Family AT5G62920 58.8 7.2e-37 151.4
Lac3g0664 . 30 179 Response Regulator Gene Family AT1G19050 71.9 5.1e-52 201.8
Lac13g0242 . 28 185 Response Regulator Gene Family AT1G19050 57.9 3.3e-43 172.6
Lac10g2145 . 8 153 Response Regulator Gene Family AT1G19050 55.5 5.0e-39 158.7
Lac1g1457 . 11 156 Response Regulator Gene Family AT1G19050 54.8 6.5e-39 158.3
Lac8g2104 . 3 160 Response Regulator Gene Family AT1G19050 53.2 5.5e-38 155.2
Lac13g0750 . 9 156 Response Regulator Gene Family AT1G19050 54.7 9.4e-38 154.5
Lac13g1253 . 20 150 Response Regulator Gene Family AT1G19050 59.5 1.8e-36 150.2
Lac1g1457 . 8 268 Response Regulator Gene Family AT2G41310 51.8 1.6e-59 226.9
Lac10g2145 . 1 155 Response Regulator Gene Family AT2G41310 75.5 4.7e-59 225.3
Lac13g0750 . 3 182 Response Regulator Gene Family AT2G41310 51.1 9.9e-49 191.0
Lac8g2104 . 8 159 Response Regulator Gene Family AT2G41310 62.5 7.1e-47 184.9
Lac8g1837 . 10 166 Response Regulator Gene Family AT2G41310 59.1 1.5e-44 177.2
Lac13g0242 . 25 158 Response Regulator Gene Family AT2G41310 59.6 3.4e-41 166.0
Lac3g0664 . 30 160 Response Regulator Gene Family AT2G41310 61.9 1.1e-39 161.0
Lac13g1253 . 20 150 Response Regulator Gene Family AT2G41310 57.4 1.9e-39 160.2
Lac2g0939 . 15 163 Response Regulator Gene Family AT2G41310 50.7 3.5e-38 156.0
Lac1g1457 . 8 268 Response Regulator Gene Family AT3G57040 52.8 1.6e-62 236.9
Lac10g2145 . 1 156 Response Regulator Gene Family AT3G57040 78.2 5.3e-61 231.9
Lac13g0750 . 4 155 Response Regulator Gene Family AT3G57040 66.9 7.1e-50 194.9
Lac8g2104 . 1 159 Response Regulator Gene Family AT3G57040 64.8 6.0e-49 191.8
Lac8g1837 . 14 159 Response Regulator Gene Family AT3G57040 62.6 3.1e-45 179.5
Lac13g0242 . 25 158 Response Regulator Gene Family AT3G57040 60.1 3.8e-43 172.6
Lac3g0664 . 26 168 Response Regulator Gene Family AT3G57040 57.5 1.6e-41 167.2
Lac2g0939 . 11 163 Response Regulator Gene Family AT3G57040 54.5 3.5e-41 166.0
Lac13g1253 . 18 150 Response Regulator Gene Family AT3G57040 55.7 4.3e-39 159.1
Lac3g0664 . 16 182 Response Regulator Gene Family AT1G74890 67.8 5.5e-54 208.4
Lac13g0242 . 25 187 Response Regulator Gene Family AT1G74890 59.4 1.2e-45 180.6
Lac1g1457 . 12 149 Response Regulator Gene Family AT1G74890 59.4 1.7e-39 160.2
Lac10g2145 . 8 151 Response Regulator Gene Family AT1G74890 55.6 6.5e-39 158.3
Lac13g0750 . 5 167 Response Regulator Gene Family AT1G74890 54.3 6.5e-39 158.3
Lac8g2104 . 9 152 Response Regulator Gene Family AT1G74890 55.6 3.2e-38 156.0
Lac13g1253 . 20 146 Response Regulator Gene Family AT1G74890 59.1 1.8e-36 150.2
Lac13g1253 . 20 151 Response Regulator Gene Family AT2G40670 69.2 6.8e-47 184.5
Lac10g2145 . 6 153 Response Regulator Gene Family AT2G40670 55.7 8.1e-40 161.0
Lac13g0242 . 26 159 Response Regulator Gene Family AT2G40670 52.6 7.5e-38 154.5
Lac3g0664 . 30 155 Response Regulator Gene Family AT2G40670 62.3 7.5e-38 154.5
Lac1g1457 . 13 156 Response Regulator Gene Family AT2G40670 51.7 8.3e-37 151.0
Lac13g1253 . 3 151 Response Regulator Gene Family AT3G56380 67.3 1.2e-48 190.3
Lac3g0664 . 20 160 Response Regulator Gene Family AT3G56380 60.1 1.2e-40 163.7
Lac10g2145 . 6 153 Response Regulator Gene Family AT3G56380 53.9 8.3e-39 157.5
Lac13g0242 . 26 159 Response Regulator Gene Family AT3G56380 51.9 1.4e-38 156.8
Lac8g1837 . 10 156 Response Regulator Gene Family AT3G56380 53.7 9.2e-38 154.1
Lac1g1457 . 13 156 Response Regulator Gene Family AT3G56380 53.7 3.5e-37 152.1
Lac13g0750 . 3 146 Response Regulator Gene Family AT3G56380 54.5 4.6e-37 151.8
Lac6g0714 . 52 256 Response Regulator Gene Family AT3G16857 53.3 1.6e-53 208.4
Lac7g0922 . 17 241 Response Regulator Gene Family AT4G16110 67.5 4.9e-80 296.6
Lac11g0905 . 26 251 Response Regulator Gene Family AT4G16110 66.7 2.4e-79 294.3
Lac2g0557 . 11 234 Response Regulator Gene Family AT4G16110 57.8 3.2e-63 240.7
Lac6g0714 . 10 235 Response Regulator Gene Family AT4G16110 54.4 1.4e-58 225.3
Lac3g0194 . 17 249 Response Regulator Gene Family AT4G16110 54.1 1.0e-56 219.2
Lac6g2882 . 18 245 Response Regulator Gene Family AT4G16110 56.8 1.5e-52 205.3
Lac3g0194 . 18 386 Response Regulator Gene Family AT4G31920 54.8 1.7e-89 327.8
Lac6g2882 . 17 337 Response Regulator Gene Family AT4G31920 52.7 4.8e-81 299.7
Lac11g0905 . 25 289 Response Regulator Gene Family AT4G31920 52.9 2.0e-71 267.7
Lac7g0922 . 16 270 Response Regulator Gene Family AT4G31920 53.9 2.1e-68 257.7
Lac6g0714 . 11 259 Response Regulator Gene Family AT4G31920 50.8 8.6e-62 235.7
Lac2g0557 . 93 256 Response Regulator Gene Family AT1G67710 53.5 1.2e-40 165.2
Lac7g0922 . 99 261 Response Regulator Gene Family AT1G67710 53.8 9.8e-40 162.2
Lac6g2882 . 17 380 Response Regulator Gene Family AT2G25180 52.8 1.2e-85 315.1
Lac7g0922 . 18 290 Response Regulator Gene Family AT2G25180 54.7 6.0e-77 286.2
Lac6g0714 . 11 256 Response Regulator Gene Family AT2G25180 55.6 3.9e-68 256.9
Lac7g0922 . 79 308 Response Regulator Gene Family AT2G01760 50.4 3.2e-53 206.5
Lac3g0194 . 79 303 Response Regulator Gene Family AT2G01760 53.9 1.8e-48 190.7
Lac6g0714 . 72 259 Response Regulator Gene Family AT2G01760 50.5 1.3e-46 184.5
Lac6g0714 . 9 258 Response Regulator Gene Family AT5G58080 51.4 2.6e-62 237.7
Lac1g2096 . 68 214 Response Regulator Gene Family AT5G60100 78.9 2.7e-60 230.3
Lac4g0028 . 58 195 Response Regulator Gene Family AT5G60100 61.6 3.2e-45 180.3
Lac7g0011 . 53 187 Response Regulator Gene Family AT5G60100 60.0 2.4e-40 164.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001295 2 3 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24167 PF00072 Response_reg 1.10E-22 CL0304 Lac TF