Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0922 ATGTCTACGGCCAGTTCGAGCTCTGTGAGGAAGCCCAGTGAAGCTGTTTCCGACCAGTTTCCGGCCGGCCTTCGTGTTCTGGTTGTTGATGATGATCCGACCTGTCTTATGATCTTGGAGAAGATGCTTCGTATTTGTCGCTATGAAGTAACAAAATGTAGCCGAGCCGAGGATGCACTGTCGCTTCTCAGACGGTACAAAAACGGGTTCGATGTCGTTTTGAGCGATGTCCATATGCCTGACATGGATGGATTCAAACTTCTGGAATACATTGGATTGGAAATGGACTTACCTGTAATTATGATGTCGGTGGATGATGGGAAAAACGTCGTCATGAAGGGAGTGACTCATGGTGCTTGTGACTATTTAATAAAACCGGTTCGAATTGAAGCGCTGAAGAACATATGGCAGCATGTTGTTCGCAAACGGAAGAATGAATGGAAAGACTTGGAGCAATCTGGTGTGGAAGATGTAGATCGGCAGCAAAAAACAAATGAAGATGCAGATTATTCATCCTCTGCTAATGAAGGGAGTTGGAGGAACTCAAAGAGGAGGAAGGACGATGTAGAAGATGCCGAGGAGAGGGATGATTCATCGACTTTGAAGAAACCAAGGGTCGTTTGGTCCGTTGAGCTCCATCAACAGTTTGTGGCTGCTGTTAATCAACTAGGAATTGATAAGGCTGTTCCCAAGAAGATTCTGGAGTTGATGAATGTTCCTGGACTCACTAGAGAAAATGTTGCTAGCCACCTTCAGAAATATCGCTTGTACCTGAGAAGAGTGAGTGGAATGGCACAACACCAGAGTAGTTTAAACAACACATTCATGAGTGCCCAAGATGCATTTGGCCCGTCGCTGAACGGGCTTGATCTTCAAACTCTCGCTGCTGCCGGTCAACTTCAGCCACAAAGCCTTGCTACACTCCAAGCAGCTGGATTTGGTAGGTCTACAGCGAAATCGGGAATGCCTATGCCCCTTGTTGATCAAAGGAACCACATTTTTAGCTTTGAAAATCCAAAGTTGAGATTTGGTGATGGGCAACAGCCACATTTGAACGGTAGTAAACCATTGAATCTACTTCACGGAATTCCAACAACAATGGAGCCAAAACAACTTGCTAATCTGCAGCATTCTGCACAATCTCATGGGAACATGACAATGCAAGTTAGTGCCCAAGGAGGCCAAACTAGCTCTCAACTAATGCAGACACCTCAATCACATGCTAGAGCACAGATCCTAAATGATAGTACCTCAACTAGCGTAACAAGGCTTCCAACGACAATACCGCAGTCAATTTTGCCGAATGGAACTGCCAGTACGGTTTTGGCTAGGAATGATTTTGCCAATAACAGCAGAGGTGGTGGGTACAATCTAGTTTCACCAGCCTCGACGATGTTGAATTTTCCCATGAACCAAACTGCCGAACTGCCTGGTAACAGTTTTCCTCTTCAAAGTACCCCAGGAATGTCAAGTATTGTACCGAAGGGAAGATTCCCAGAGGATGTTAACTCAGACATTAAAGGATCTGAAGGTTTTGTGCCAAGCTATGATATGTTTAGGGATCTGCATCCTCAGAAGCCAGATTGGGACTTGCAACATGTCGGCGTGACCTTCGATGCGTCTCAAGGTAGTCTCGACATTCCACCCTCAGCTTTTGCTCATCAAGGGTATGCCTCTAGCCAACAAAATGGACAAAACAGGAATGCATCTACGGCAAGCAAGGCCATGTTCTTGTTGGAAGAAGGAAGTGACAATGGGAATGCACAAAGTATGGGTCAGCAACTCAACCCTCTTTTCGTTGACGGTTCGGTGCGAGTTAAAGCTGAAAGAGCTTCTGATTGTAGCAGCCAAACTGACCTTTTTTCTGAACACTTTGGTCAGGAGGACCTAATGAGTGCACTTCTTAAGCAGCAACAGGGAAGCATTGCAACAGCTGAAAGTGAATTGGAATGGGTATTTCATCATAATACTCCTGTTTAG 1980 45.4 MSTASSSSVRKPSEAVSDQFPAGLRVLVVDDDPTCLMILEKMLRICRYEVTKCSRAEDALSLLRRYKNGFDVVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGVEDVDRQQKTNEDADYSSSANEGSWRNSKRRKDDVEDAEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRVSGMAQHQSSLNNTFMSAQDAFGPSLNGLDLQTLAAAGQLQPQSLATLQAAGFGRSTAKSGMPMPLVDQRNHIFSFENPKLRFGDGQQPHLNGSKPLNLLHGIPTTMEPKQLANLQHSAQSHGNMTMQVSAQGGQTSSQLMQTPQSHARAQILNDSTSTSVTRLPTTIPQSILPNGTASTVLARNDFANNSRGGGYNLVSPASTMLNFPMNQTAELPGNSFPLQSTPGMSSIVPKGRFPEDVNSDIKGSEGFVPSYDMFRDLHPQKPDWDLQHVGVTFDASQGSLDIPPSAFAHQGYASSQQNGQNRNASTASKAMFLLEEGSDNGNAQSMGQQLNPLFVDGSVRVKAERASDCSSQTDLFSEHFGQEDLMSALLKQQQGSIATAESELEWVFHHNTPV 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7732095 7735158 + Lag0021439.1 Lac7g0922 613823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0922 659 PIRSF RR_ARR_type-B 2 649 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Lac7g0922 659 CDD REC_typeB_ARR-like 26 140 - -
Lac7g0922 659 Gene3D - 200 262 - -
Lac7g0922 659 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Lac7g0922 659 Pfam Myb-like DNA-binding domain 205 255 IPR001005 -
Lac7g0922 659 FunFam Two-component response regulator 199 262 - -
Lac7g0922 659 SUPERFAMILY Homeodomain-like 200 260 IPR009057 -
Lac7g0922 659 MobiDBLite consensus disorder prediction 151 166 - -
Lac7g0922 659 Gene3D - 24 161 - -
Lac7g0922 659 MobiDBLite consensus disorder prediction 151 200 - -
Lac7g0922 659 NCBIfam myb-like DNA-binding domain, SHAQKYF class 203 256 IPR006447 GO:0003677(InterPro)
Lac7g0922 659 SUPERFAMILY CheY-like 23 148 IPR011006 -
Lac7g0922 659 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Lac7g0922 659 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Lac7g0922 659 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 263 IPR045279 GO:0009736(InterPro)
Lac7g0922 659 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 259 IPR017930 -
Lac7g0922 659 MobiDBLite consensus disorder prediction 179 200 - -
Lac7g0922 659 FunFam Two-component response regulator 24 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0194 Lac-Chr3:1367917 Lac7g0922 Lac-Chr7:7732095 4.40E-84 dispersed
Lac3g0306 Lac-Chr3:2178269 Lac7g0922 Lac-Chr7:7732095 1.30E-44 dispersed
Lac4g2494 Lac-Chr4:44245865 Lac7g0922 Lac-Chr7:7732095 2.30E-30 dispersed
Lac4g2495 Lac-Chr4:44260895 Lac7g0922 Lac-Chr7:7732095 3.10E-10 dispersed
Lac6g2882 Lac-Chr6:46483755 Lac7g0922 Lac-Chr7:7732095 1.70E-67 dispersed
Lac7g0011 Lac-Chr7:101859 Lac7g0922 Lac-Chr7:7732095 1.80E-14 dispersed
Lac7g0922 Lac-Chr7:7732095 Lac7g2753 Lac-Chr7:46695277 1.70E-19 dispersed
Lac12g1948 Lac-Chr12:36297334 Lac7g0922 Lac-Chr7:7732095 7.90E-37 transposed
Lac5g2898 Lac-Chr5:47156859 Lac7g0922 Lac-Chr7:7732095 1.80E-46 transposed
Lac6g0714 Lac-Chr6:6074972 Lac7g0922 Lac-Chr7:7732095 7.40E-80 transposed
Lac11g0905 Lac-Chr11:9768244 Lac7g0922 Lac-Chr7:7732095 1.80E-215 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24167 PF00072 Response_reg 1.10E-22 CL0304 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0922 K14491 - csv:101209013 1224.54