Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0960 ATGGTTTCTAGTAATCGAGCGACGAATTCGCATCAGCAACAGGCTCAGTCCTCGAACACGAATACGAGCCATTTGCGATCTCATCGTACAGAATCCATCAGCAAAGCCATAGCGCAGTACACCGTCGATGCTCGTCTTCACGCGGTGTTCGAGCAGTCGGGTGAGTCTGGTAAATCTTTTGACTACTCACAGTCTATTAGAACTTCGACACAATCTGTGCCGGAGCAGCAAATTACTGCTTATTTGTCGAAGATTCAGAGGGGCGGCCATATCCAGCCCTTTGGGTGTATGATAGCAATAGATGAGGCTACTTTTCGGGTTATTGCTTACAGTGAGAACGCTAGGGAATTGCTTGGTCTTACGCCTCAATCAGTGCCGAGTCTTGAAAAGCCTGAGATCCTCACAATTGGGACTGATGTACGGAACTTGTTCACTTCCAACAGTGCAATTCTGCTCGAGAAGGCATTTGGGGCTCGAGAAATCACTTTGTTGAACCCTGTTTGGATTCATTCCAAGAATTCTGGGAAGCCCTTTTATGCTATTTTGCATAGGATTGATGTGGGAATTGTGATTGATTTGGAGCCTGCAAGAACGGAGGATCCTGCCCTTTCTATTGCTGGGGCGGTCCAATCGCAGAAGCTTGCGGTTCGTGCAATTTCTCAGTTACAATCACTCCCTGGTGGAGATATTAAACTGTTGTGTGATACTGTGGTTGAGAGTGTTAGGGAGCTTACTGGATATGATAGAGTTATGGTGTATAAATTTCATGAGGATGAGCATGGTGAGGTTGTGGCTGAAAGCAAGAGGCCAGACTTAGAGCCATACATTGGACTGCATTATCCTTCTACTGATATTCCTCAGGCATCAAGGTTTTTGTTTAAGCAAAACCGGGTTAGGATGATAGTTGATTGCCATGCTTCTCCAGTTCGTGTAATTCAGGATGCCGGGCTTATGCAACCTCTCTGCTTAGTGGGTTCGACTCTTCGTGCTCCCCATGGATGTCATGCCCAGTATATGGCCAATATGGGCTCTATTGCTTCGTTAGCAATGGCTGTTGTTATCAATGGTAATGATGATGATGCTATTGGTGGGCGAAACTCAACAAGGCTTTGGGGTTTGGTTGTATGCCACCATACTTCTGCTCGGTGTATTCCATTCCCGCTTCGGTATGCATGTGAGTTTCTAATGCAGGCCTTTGGGCTTCAACTGAATATGGAATTGCAGTTGGCTTCACAGATGTCTGAGAAACATGTTTTGAGGACTCAAACTCTCTTGTGTGACATGCTTCTTCGTGATTCCCCAACTGGCATTGTTACGCAGAGTCCAAGCATCATGGACCTAGTAAAGTGTGATGGGGCAGCTCTTCACTATCAAGGGAAATATTACCCTCTGGGTGTGACGCCAACTGAAGCCCAAATAAAGGATATTGTGGAATGGTTGTTGGCTTTCCATGGAGATTCAACTGGTTTAAGTACAGATAGCTTGGCTGATGCTGGATATCCAGGGGCAGCCTTGCTTGGTGATGCAGTTTGTGGAATGGCTGTTGCTTATATCACAAAAAGGGATTTTCTATTTTGGTTCCGATCACACACGGCAAAAGAGATCAAGTGGGGTGGTGCAAAGCATCACCCAGAGGATAAGGATGATGGTCAAAGAATGCATCCTCGTTCTTCATTCAAGGCATTCTTGGAAGTGGTAAAATCCCGTAGTTTACCATGGGAGAATGCAGAAATGGATGCTATTCACTCATTGCAGCTTATTCTTCGAGATTCATTTAAGGATGATGTTGCAATCAATTCGAAGGCAGTTGTGCACCCTCAACTAGGGGATCTTGACTTGCAAGGGATTGATGAGCTCAGCTCGGTTGCAAGAGAAATGGTCAGGTTGATTGAGACTGCAACTGCTCCTATCTTTGCTGTAGATGTCGATGGTCATATAAATGGATGGAATGCTAAGATGTCTGAGTTGACTGGGCTTGCGGTTGAGGAAGCTATGGGAAATCCTTAG 2007 45.64 MVSSNRATNSHQQQAQSSNTNTSHLRSHRTESISKAIAQYTVDARLHAVFEQSGESGKSFDYSQSIRTSTQSVPEQQITAYLSKIQRGGHIQPFGCMIAIDEATFRVIAYSENARELLGLTPQSVPSLEKPEILTIGTDVRNLFTSNSAILLEKAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHASPVRVIQDAGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVVINGNDDDAIGGRNSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQMSEKHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALHYQGKYYPLGVTPTEAQIKDIVEWLLAFHGDSTGLSTDSLADAGYPGAALLGDAVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKDDVAINSKAVVHPQLGDLDLQGIDELSSVAREMVRLIETATAPIFAVDVDGHINGWNAKMSELTGLAVEEAMGNP 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8162827 8164833 + Lag0021477.1 Lac7g0960 613861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0960 668 Pfam GAF domain 230 407 IPR003018 GO:0005515(InterPro)
Lac7g0960 668 SMART gaf_1 229 417 IPR003018 GO:0005515(InterPro)
Lac7g0960 668 Gene3D - 412 585 IPR043150 -
Lac7g0960 668 CDD PAS 633 668 IPR000014 -
Lac7g0960 668 Gene3D PAS domain 84 332 - -
Lac7g0960 668 Gene3D - 210 568 IPR029016 -
Lac7g0960 668 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 229 397 IPR016132 -
Lac7g0960 668 ProSiteProfiles PAS repeat profile. 622 668 IPR000014 -
Lac7g0960 668 FunFam Phytochrome 412 542 - -
Lac7g0960 668 Pfam Phytochrome region 420 593 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac7g0960 668 PRINTS Phytochrome signature 144 166 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac7g0960 668 PRINTS Phytochrome signature 644 659 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac7g0960 668 PRINTS Phytochrome signature 437 457 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac7g0960 668 PRINTS Phytochrome signature 244 263 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac7g0960 668 PRINTS Phytochrome signature 329 350 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac7g0960 668 PRINTS Phytochrome signature 522 541 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac7g0960 668 PRINTS Phytochrome signature 625 641 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac7g0960 668 PRINTS Phytochrome signature 555 573 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac7g0960 668 SUPERFAMILY GAF domain-like 209 404 - -
Lac7g0960 668 Pfam PAS fold 625 667 IPR013767 GO:0006355(InterPro)
Lac7g0960 668 ProSitePatterns Phytochrome chromophore attachment site signature. 329 338 IPR013516 -
Lac7g0960 668 PANTHER OS08G0260000 PROTEIN 18 619 - -
Lac7g0960 668 Pfam PAS fold 80 196 IPR013654 GO:0006355(InterPro)
Lac7g0960 668 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 199 IPR035965 -
Lac7g0960 668 MobiDBLite consensus disorder prediction 1 30 - -
Lac7g0960 668 SUPERFAMILY GAF domain-like 415 592 - -
Lac7g0960 668 SUPERFAMILY PYP-like sensor domain (PAS domain) 627 666 IPR035965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0960 K12121 - - csv:101212197 1289.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0061 Lac-Chr6:490572 Lac7g0960 Lac-Chr7:8162827 3.00E-227 dispersed
Lac6g0064 Lac-Chr6:529084 Lac7g0960 Lac-Chr7:8162827 2.10E-216 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac5g0101 . 30 1213 Histidine Kinase Gene Family AT2G17820 65.1 0.0e+00 1446.8
Lac13g1678 . 28 1013 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1348.2
Lac8g2211 . 23 959 Histidine Kinase Gene Family AT2G01830 72.2 0.0e+00 1322.4
Lac4g1833 . 79 1023 Histidine Kinase Gene Family AT2G01830 53.6 3.7e-279 958.7
Lac12g0372 . 1068 2020 Histidine Kinase Gene Family AT2G01830 53.5 1.3e-276 950.3
Lac9g1967 . 283 1238 Histidine Kinase Gene Family AT2G01830 52.4 7.7e-269 924.5
Lac2g0516 . 1 984 Histidine Kinase Gene Family AT5G10720 57.9 5.5e-287 984.6
Lac6g0061 . 129 1248 Histidine Kinase Gene Family AT1G09570 80.7 0.0e+00 1842.8
Lac6g0064 . 1 1130 Histidine Kinase Gene Family AT1G09570 73.9 0.0e+00 1691.8
Lac12g0396 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.6 0.0e+00 1230.3
Lac7g0960 . 27 666 Histidine Kinase Gene Family AT1G09570 60.4 1.7e-229 793.9
Lac10g1014 . 31 1051 Histidine Kinase Gene Family AT2G18790 61.2 0.0e+00 1258.4
Lac6g0061 . 149 1182 Histidine Kinase Gene Family AT2G18790 53.7 0.0e+00 1094.7
Lac7g0960 . 13 666 Histidine Kinase Gene Family AT2G18790 84.2 0.0e+00 1094.0
Lac12g0396 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.6 7.9e-314 1073.9
Lac6g0064 . 7 1065 Histidine Kinase Gene Family AT2G18790 51.5 1.7e-311 1066.2
Lac7g0961 . 45 414 Histidine Kinase Gene Family AT2G18790 70.0 3.2e-156 550.4
Lac12g0396 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.2 0.0e+00 1382.9
Lac6g0061 . 137 1242 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1119.0
Lac7g0960 . 21 668 Histidine Kinase Gene Family AT5G35840 58.7 9.3e-225 778.1
Lac10g1014 . 32 1113 Histidine Kinase Gene Family AT4G16250 59.0 0.0e+00 1300.0
Lac6g0061 . 136 1243 Histidine Kinase Gene Family AT4G16250 52.8 0.0e+00 1140.6
Lac12g0396 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1115.5
Lac6g0064 . 8 1126 Histidine Kinase Gene Family AT4G16250 50.7 0.0e+00 1089.7
Lac7g0960 . 3 666 Histidine Kinase Gene Family AT4G16250 79.6 7.1e-308 1054.3
Lac7g0961 . 45 475 Histidine Kinase Gene Family AT4G16250 71.0 6.0e-182 636.0
Lac10g1014 . 15 1113 Histidine Kinase Gene Family AT4G18130 64.0 0.0e+00 1404.0
Lac7g0960 . 3 666 Histidine Kinase Gene Family AT4G18130 63.2 1.5e-235 813.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004550 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 3 1 1 42