Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0961 ATGTTTTTCCTCTCAAAGCTAAAAACTGTGTTATGTTCCCTAGAGCTATTATGTGATCATCAAAATGTTTCTGGCAATCTAACTAGACATGATTGGGTCAGCCCGTATACTAATGAACTTGAGATGCCTTTAGGTGAAGAAGATAAAAATATAGAGATGAAAATGAGGACATTTGGGCCAGAAGATCAAAGGACGCCAATTTTTGTGGTCGTCAATGCTTGCTCTAGCAGGGACTACACTGATAATATAGTAGGCGTTTGTTTCGTTGGTCAAGATGTTACCTGCCAAAAAGTGTTCATGGACAAATTTATTAGCATACAAGGTGACTACAAAGCAATTATTCATAGTCCCAATCCTCTTATCCCTCCAATATTTGCTTCAGACGACAATACATGTTGCTCAGAATGGAATACTGCCATGGAAAAGCTCACTGGATGGTCCAGAGAGGACATAATTGGAAAAATGCTAGTAGGAGAGATTTTTGGAAGTTGTTGTCGACTGAAGGGTCCAGATGCATTGACCAAATTTATGATTGTCTTGCACAGTGCAATTGGAGGACAGGACAACGAAAAATTCCCCTTTTCTTTTTATGACAAAAAGGGTAAATATGTGCAAGCTCTCTTGACAGCAAATAAGAGGATGAATATGGAGGGTCAGATTGTTGGAGCTTTTTGCTTCTTACAGATAGCTAGTCCTGAATTGCAGCAAACTCTTAGAATGCAAAGGCAACAAGAGAAGAACAGGTTTGCAAGGATGAAAGAGCTGGCTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGTGGTATACGCTTTACTAACTCACTTTTGGAGGCTACAGATTTGAGTGAAGATCAAAAGCAGTTTCTCGAGACCAGTGTTGCTTGTGAAAAGCAGATGTTAAAGATTATAGAAGATATGGATTTGGAAAGTATTGATGATGGTACAATGGAGCTTGAGAAGGGGGAGTTCTTATTGGGAAGTGTTATTAATGCTGTTGTTAGTCAAGTGATGTTACTACTCAGAGAAAGAAACTTACAACTGATTCGTGATATACCAGAAGAAGTAAAAACTATGGCTGTCTATGGCGATCAAGTGAGGATTCAACAGGTCTTAGCTGATTTCTTGTTGAATATGGTGCGTTACGCGCCCTCTCCGGAAGGCTGGGTAGAAATACGCGTCTGTCCATTCCTGAAGCAAAACTCAGAAGGACTTACTCTCGCACACACTGAATTCAGGATTGTATGCCCTGGGGAAGGTCTACCACCTGAGTTGGTACAGGACATGTTTCATAGTGGCAGATGGGTGACTCAAGAAGGATTAGGCTTGAGCATGTGCAGAAAGATTCTGAAGCTCATGAATGGTGAAGTCCAATACATCAGAGAGTCTGAAAGGTGTTATTTCTTGATCACTCTTGAACTCCCCTTGACAGAGAGAGGCCTCAGCGACGTCGGTTAG 1455 41.17 MFFLSKLKTVLCSLELLCDHQNVSGNLTRHDWVSPYTNELEMPLGEEDKNIEMKMRTFGPEDQRTPIFVVVNACSSRDYTDNIVGVCFVGQDVTCQKVFMDKFISIQGDYKAIIHSPNPLIPPIFASDDNTCCSEWNTAMEKLTGWSREDIIGKMLVGEIFGSCCRLKGPDALTKFMIVLHSAIGGQDNEKFPFSFYDKKGKYVQALLTANKRMNMEGQIVGAFCFLQIASPELQQTLRMQRQQEKNRFARMKELAYICQEVKSPLSGIRFTNSLLEATDLSEDQKQFLETSVACEKQMLKIIEDMDLESIDDGTMELEKGEFLLGSVINAVVSQVMLLLRERNLQLIRDIPEEVKTMAVYGDQVRIQQVLADFLLNMVRYAPSPEGWVEIRVCPFLKQNSEGLTLAHTEFRIVCPGEGLPPELVQDMFHSGRWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLITLELPLTERGLSDVG 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8165156 8167747 + Lag0021478.1 Lac7g0961 613862

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0961 484 SMART HisKA_10 250 314 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac7g0961 484 PRINTS Phytochrome signature 91 111 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac7g0961 484 PRINTS Phytochrome signature 71 88 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac7g0961 484 CDD PAS 120 228 IPR000014 -
Lac7g0961 484 Gene3D - 231 312 - -
Lac7g0961 484 ProSiteProfiles Histidine kinase domain profile. 257 477 IPR005467 -
Lac7g0961 484 Gene3D PAS domain 122 230 - -
Lac7g0961 484 FunFam Phytochrome 231 312 - -
Lac7g0961 484 Pfam His Kinase A (phospho-acceptor) domain 251 314 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac7g0961 484 Pfam PAS fold 109 228 IPR013767 GO:0006355(InterPro)
Lac7g0961 484 SUPERFAMILY PYP-like sensor domain (PAS domain) 123 227 IPR035965 -
Lac7g0961 484 ProSiteProfiles PAS repeat profile. 109 161 IPR000014 -
Lac7g0961 484 PANTHER TWO-COMPONENT HISTIDINE KINASE 40 461 IPR050956 GO:0005634(PANTHER)
Lac7g0961 484 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 325 474 IPR036890 -
Lac7g0961 484 Gene3D - 313 479 IPR036890 -
Lac7g0961 484 FunFam Phytochrome 313 479 - -
Lac7g0961 484 CDD HisKA 243 306 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac7g0961 484 FunFam Phytochrome 122 230 - -
Lac7g0961 484 CDD HATPase_Phy-like 361 473 IPR044767 -
Lac7g0961 484 SMART HKATPase_4 362 477 IPR003594 -
Lac7g0961 484 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 362 475 IPR003594 -
Lac7g0961 484 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 238 306 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0961 K12121 - - csv:101212197 867.07
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac5g0101 . 30 1213 Histidine Kinase Gene Family AT2G17820 65.1 0.0e+00 1446.8
Lac13g1678 . 28 1013 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1348.2
Lac8g2211 . 23 959 Histidine Kinase Gene Family AT2G01830 72.2 0.0e+00 1322.4
Lac4g1833 . 79 1023 Histidine Kinase Gene Family AT2G01830 53.6 3.7e-279 958.7
Lac12g0372 . 1068 2020 Histidine Kinase Gene Family AT2G01830 53.5 1.3e-276 950.3
Lac9g1967 . 283 1238 Histidine Kinase Gene Family AT2G01830 52.4 7.7e-269 924.5
Lac2g0516 . 1 984 Histidine Kinase Gene Family AT5G10720 57.9 5.5e-287 984.6
Lac6g0061 . 129 1248 Histidine Kinase Gene Family AT1G09570 80.7 0.0e+00 1842.8
Lac6g0064 . 1 1130 Histidine Kinase Gene Family AT1G09570 73.9 0.0e+00 1691.8
Lac12g0396 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.6 0.0e+00 1230.3
Lac7g0960 . 27 666 Histidine Kinase Gene Family AT1G09570 60.4 1.7e-229 793.9
Lac10g1014 . 31 1051 Histidine Kinase Gene Family AT2G18790 61.2 0.0e+00 1258.4
Lac6g0061 . 149 1182 Histidine Kinase Gene Family AT2G18790 53.7 0.0e+00 1094.7
Lac7g0960 . 13 666 Histidine Kinase Gene Family AT2G18790 84.2 0.0e+00 1094.0
Lac12g0396 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.6 7.9e-314 1073.9
Lac6g0064 . 7 1065 Histidine Kinase Gene Family AT2G18790 51.5 1.7e-311 1066.2
Lac7g0961 . 45 414 Histidine Kinase Gene Family AT2G18790 70.0 3.2e-156 550.4
Lac12g0396 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.2 0.0e+00 1382.9
Lac6g0061 . 137 1242 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1119.0
Lac7g0960 . 21 668 Histidine Kinase Gene Family AT5G35840 58.7 9.3e-225 778.1
Lac10g1014 . 32 1113 Histidine Kinase Gene Family AT4G16250 59.0 0.0e+00 1300.0
Lac6g0061 . 136 1243 Histidine Kinase Gene Family AT4G16250 52.8 0.0e+00 1140.6
Lac12g0396 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1115.5
Lac6g0064 . 8 1126 Histidine Kinase Gene Family AT4G16250 50.7 0.0e+00 1089.7
Lac7g0960 . 3 666 Histidine Kinase Gene Family AT4G16250 79.6 7.1e-308 1054.3
Lac7g0961 . 45 475 Histidine Kinase Gene Family AT4G16250 71.0 6.0e-182 636.0
Lac10g1014 . 15 1113 Histidine Kinase Gene Family AT4G18130 64.0 0.0e+00 1404.0
Lac7g0960 . 3 666 Histidine Kinase Gene Family AT4G18130 63.2 1.5e-235 813.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004550 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 3 1 1 42