Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g0961 ATGTTTTTCCTCTCAAAGCTAAAAACTGTGTTATGTTCCCTAGAGCTATTATGTGATCATCAAAATGTTTCTGGCAATCTAACTAGACATGATTGGGTCAGCCCGTATACTAATGAACTTGAGATGCCTTTAGGTGAAGAAGATAAAAATATAGAGATGAAAATGAGGACATTTGGGCCAGAAGATCAAAGGACGCCAATTTTTGTGGTCGTCAATGCTTGCTCTAGCAGGGACTACACTGATAATATAGTAGGCGTTTGTTTCGTTGGTCAAGATGTTACCTGCCAAAAAGTGTTCATGGACAAATTTATTAGCATACAAGGTGACTACAAAGCAATTATTCATAGTCCCAATCCTCTTATCCCTCCAATATTTGCTTCAGACGACAATACATGTTGCTCAGAATGGAATACTGCCATGGAAAAGCTCACTGGATGGTCCAGAGAGGACATAATTGGAAAAATGCTAGTAGGAGAGATTTTTGGAAGTTGTTGTCGACTGAAGGGTCCAGATGCATTGACCAAATTTATGATTGTCTTGCACAGTGCAATTGGAGGACAGGACAACGAAAAATTCCCCTTTTCTTTTTATGACAAAAAGGGTAAATATGTGCAAGCTCTCTTGACAGCAAATAAGAGGATGAATATGGAGGGTCAGATTGTTGGAGCTTTTTGCTTCTTACAGATAGCTAGTCCTGAATTGCAGCAAACTCTTAGAATGCAAAGGCAACAAGAGAAGAACAGGTTTGCAAGGATGAAAGAGCTGGCTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGTGGTATACGCTTTACTAACTCACTTTTGGAGGCTACAGATTTGAGTGAAGATCAAAAGCAGTTTCTCGAGACCAGTGTTGCTTGTGAAAAGCAGATGTTAAAGATTATAGAAGATATGGATTTGGAAAGTATTGATGATGGTACAATGGAGCTTGAGAAGGGGGAGTTCTTATTGGGAAGTGTTATTAATGCTGTTGTTAGTCAAGTGATGTTACTACTCAGAGAAAGAAACTTACAACTGATTCGTGATATACCAGAAGAAGTAAAAACTATGGCTGTCTATGGCGATCAAGTGAGGATTCAACAGGTCTTAGCTGATTTCTTGTTGAATATGGTGCGTTACGCGCCCTCTCCGGAAGGCTGGGTAGAAATACGCGTCTGTCCATTCCTGAAGCAAAACTCAGAAGGACTTACTCTCGCACACACTGAATTCAGGATTGTATGCCCTGGGGAAGGTCTACCACCTGAGTTGGTACAGGACATGTTTCATAGTGGCAGATGGGTGACTCAAGAAGGATTAGGCTTGAGCATGTGCAGAAAGATTCTGAAGCTCATGAATGGTGAAGTCCAATACATCAGAGAGTCTGAAAGGTGTTATTTCTTGATCACTCTTGAACTCCCCTTGACAGAGAGAGGCCTCAGCGACGTCGGTTAG 1455 41.17 MFFLSKLKTVLCSLELLCDHQNVSGNLTRHDWVSPYTNELEMPLGEEDKNIEMKMRTFGPEDQRTPIFVVVNACSSRDYTDNIVGVCFVGQDVTCQKVFMDKFISIQGDYKAIIHSPNPLIPPIFASDDNTCCSEWNTAMEKLTGWSREDIIGKMLVGEIFGSCCRLKGPDALTKFMIVLHSAIGGQDNEKFPFSFYDKKGKYVQALLTANKRMNMEGQIVGAFCFLQIASPELQQTLRMQRQQEKNRFARMKELAYICQEVKSPLSGIRFTNSLLEATDLSEDQKQFLETSVACEKQMLKIIEDMDLESIDDGTMELEKGEFLLGSVINAVVSQVMLLLRERNLQLIRDIPEEVKTMAVYGDQVRIQQVLADFLLNMVRYAPSPEGWVEIRVCPFLKQNSEGLTLAHTEFRIVCPGEGLPPELVQDMFHSGRWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLITLELPLTERGLSDVG 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8165156 8167747 + Lag0021478.1 Lac7g0961 613862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g0961 484 SMART HisKA_10 250 314 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac7g0961 484 PRINTS Phytochrome signature 91 111 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac7g0961 484 PRINTS Phytochrome signature 71 88 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac7g0961 484 CDD PAS 120 228 IPR000014 -
Lac7g0961 484 Gene3D - 231 312 - -
Lac7g0961 484 ProSiteProfiles Histidine kinase domain profile. 257 477 IPR005467 -
Lac7g0961 484 Gene3D PAS domain 122 230 - -
Lac7g0961 484 FunFam Phytochrome 231 312 - -
Lac7g0961 484 Pfam His Kinase A (phospho-acceptor) domain 251 314 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac7g0961 484 Pfam PAS fold 109 228 IPR013767 GO:0006355(InterPro)
Lac7g0961 484 SUPERFAMILY PYP-like sensor domain (PAS domain) 123 227 IPR035965 -
Lac7g0961 484 ProSiteProfiles PAS repeat profile. 109 161 IPR000014 -
Lac7g0961 484 PANTHER TWO-COMPONENT HISTIDINE KINASE 40 461 IPR050956 GO:0005634(PANTHER)
Lac7g0961 484 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 325 474 IPR036890 -
Lac7g0961 484 Gene3D - 313 479 IPR036890 -
Lac7g0961 484 FunFam Phytochrome 313 479 - -
Lac7g0961 484 CDD HisKA 243 306 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac7g0961 484 FunFam Phytochrome 122 230 - -
Lac7g0961 484 CDD HATPase_Phy-like 361 473 IPR044767 -
Lac7g0961 484 SMART HKATPase_4 362 477 IPR003594 -
Lac7g0961 484 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 362 475 IPR003594 -
Lac7g0961 484 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 238 306 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g0961 K12121 - csv:101212197 867.07