Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g1016 ATGAGAGTTGGGAAGTATGAGTTGGGGAAAACTCTTGGAGAAGGCAATTTCGGCAAGGTGAAGTTGGCCGCCGACCACCGTACCGGCCGCCGTTACGCCGTCAAGATCGTCGACAAGACCAAGATTCTCCATCTCAACTTCTCCGATCAGATTAAGCGTGAAATAAGTACTCTAAAGCTCCTCCGGCATCCGAATGTTGTTAGACTCTACGAGGTTTTAGCTAGTAAGACGAAGATTTATATGGTTATGGAGTGCGCCTCTGGTGGTGAATTGTTTGATAGAATCGAATCGAAAGGTAAGGTGGATGAAGCTGAAGGACGGAGACTATTCCAGCAGCTTATTGATGGCCTCAGCTACTGCCACGATAAAGGAGTTTACCACAGGGATCTCAAGCTGGAAAACGTGCTTGTTGATGCTAAGGGAAACATTAAGATTTCTGATTTTGGCCTCAGTGCTTTGCCGCAGAATTGCAGGGAAGATGGTTTGCTGCACACCACCTGTGGAAGTCCCAACTATGTTGCACCAGAGGTACTTGCTAATAGAGGATACGATGGAGCCGCCTCTGATATATGGTCATGTGGGGTTATCTTGTATGTTATTCTTACAGCTTGTCTTCCTTTCGACGAAACCAATCTGGCTTTACTTTATAAAAAGACTTTGAGGGGGGATTTTCAGATACCCAAATGGTTATCAGCAGGTGCCAGAAATTTGATAAGGAGAACTCTTGATCCCAACCCCAATACTCGGATTACAATGGCAGGAATCAAAGAGGATGAGTGGTTCAAGATTGACTATAGTCCTGCTTCTCCTTGTGATGATGATGATGAGGAGGAGGGTCCACTCATTGATCAGGATGATGCCATCTCAACGCATGATGAGCCATCTGACGTGGAAAACAGCCCAGAATCTCCATCTATTATCAATGCGTTTGAGTTAATTGGGATGTCTTCAAGTTTGGATCTGTCTGGCTTCTTTGAGCAAGAGGATGTTTCTGAGAGGAAGATCAGATTTACGTCCAATCATTCTGCTAAAGACCTGCTTGAGAGAATCGAGGTTATCGCAACCGATATGGGATTTCGAGTCCAGAAGAAGAGTGGAAAGTTGAAAGTGATGCAAGAGATAAGAAGTCAAAAAAGCCTAAGTAGTCTCTCATTTGTAGCCGAGGTCTTTGAGATAAGCCCATTGCTTCACGTCGTTGAACTGAAAAAATCTTTTGGAGATTCATCAGCTTACAGACAGATAAATGGGGGACGGAGTCTACGTGGCAAGCCGATTGCCAAGCTCTTCACTATATACCTGTATCAAACCGCTGTCGTCGTCATTTTGGAGCTTATGGTTGAGAATGGCCTTGTATTGATCGTCTCTGTTCTCCAAGCCGCGTATGAATTCAACCTGAGAGAAGAAAAGGAATGTTGTTAA 1419 44.61 MRVGKYELGKTLGEGNFGKVKLAADHRTGRRYAVKIVDKTKILHLNFSDQIKREISTLKLLRHPNVVRLYEVLASKTKIYMVMECASGGELFDRIESKGKVDEAEGRRLFQQLIDGLSYCHDKGVYHRDLKLENVLVDAKGNIKISDFGLSALPQNCREDGLLHTTCGSPNYVAPEVLANRGYDGAASDIWSCGVILYVILTACLPFDETNLALLYKKTLRGDFQIPKWLSAGARNLIRRTLDPNPNTRITMAGIKEDEWFKIDYSPASPCDDDDEEEGPLIDQDDAISTHDEPSDVENSPESPSIINAFELIGMSSSLDLSGFFEQEDVSERKIRFTSNHSAKDLLERIEVIATDMGFRVQKKSGKLKVMQEIRSQKSLSSLSFVAEVFEISPLLHVVELKKSFGDSSAYRQINGGRSLRGKPIAKLFTIYLYQTAVVVILELMVENGLVLIVSVLQAAYEFNLREEKECC 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8837848 8841234 + Lag0021533.1 Lac7g1016 613917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g1016 472 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac7g1016 472 SMART serkin_6 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac7g1016 472 ProSiteProfiles Protein kinase domain profile. 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac7g1016 472 Gene3D Kinase associated domain 1, KA1 309 419 - -
Lac7g1016 472 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524(InterPro)
Lac7g1016 472 Gene3D Transferase(Phosphotransferase) domain 1 2 308 - -
Lac7g1016 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac7g1016 472 FunFam Non-specific serine/threonine protein kinase 304 419 - -
Lac7g1016 472 ProSiteProfiles NAF domain profile. 302 326 IPR018451 GO:0007165(InterPro)
Lac7g1016 472 FunFam Non-specific serine/threonine protein kinase 1 85 - -
Lac7g1016 472 SUPERFAMILY Protein kinase-like (PK-like) 3 262 IPR011009 -
Lac7g1016 472 CDD CIPK_C 308 414 - -
Lac7g1016 472 Pfam NAF domain 304 363 IPR004041 GO:0007165(InterPro)
Lac7g1016 472 MobiDBLite consensus disorder prediction 284 298 - -
Lac7g1016 472 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 412 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lac7g1016 472 MobiDBLite consensus disorder prediction 267 302 - -
Lac7g1016 472 FunFam Non-specific serine/threonine protein kinase 1 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1066 Lac-Chr11:12375059 Lac7g1016 Lac-Chr7:8837848 9.40E-157 dispersed
Lac7g1016 Lac-Chr7:8837848 Lac9g2932 Lac-Chr9:47112424 2.30E-116 dispersed
Lac7g1016 Lac-Chr7:8837848 Lac9g1603 Lac-Chr9:35237261 6.40E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86329 PF00069 Pkinase 3.90E-72 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g1016 K07198 - csv:101205987 775.778