Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g1060 ATGGAGGACGATTTCCAGTTCCCATCTGCAACCAATGTGGACGAGGAAATGGCCATTCCTGAGGACGAAGCGGAGAGTCCGGTTCTGAAGGTTGGCGAGGAGAAGGAGATTGGAAAGAGCGGGCTGAAAAAGAAACTTGTTAAAGAAGGTGAAGGGTGGGAGACTCCCGACACTGGAGATGAAGTCCAAGTGCATTATACGGGAACCCTTCTTGATGGGACTAAATTCGACTCGAGCCGTGACCGAGGAACGCCGTTTAAGTTCAAGCTCGGCGAAGGGCAAGTGATTAAAGGATGGGATGAGGGTATCAAAACAATGAAAAAGGGTGAAAATGCAGTTTTCACGATTCCCCCTGAATTGGCCTATGGAGAGTCTGGCTCTCCTCCAACAATTCCACCGAACGCTACTCTTCAATTTGATGTCGAGCTACTTTCATGGCACAGCGTCAAAGATATCTGTCAAGATGGAGGAATCTTCAAAAAGATTCTTGTTAAAGGAGATGGTTGGGACAAACCGAAGGATCTAGACGAAGTATTGGTTACTTACGAGGCTCGTCTTGAAGACGGAACACTGATCTCAAAGTATGATGGGGTTGAATTCACTGTTGAAAAGGGCTACTTCTGCCCTGCCTTGGCGACATCTGTGAAGACGATGAAGAAGGGAGAGAAAGTTCTGTTGACTGTGAGGCCACAATATGCATTTGGGGAGTCTGGCAGGCCTGCAGCTGGGGAAGAAGGGGCTGTGCCTCCTAATGCCACTCTTCAGATAACCCTTGAATTGGTTTCTTGGAAAGCTGTTACAGACATTAATAAGGACAAGAAGGTCCTGAAAAAGACCCTGAAGGAGGGAGAAGGATATGATCTGCCAAATGATGGAGCTGTGGTTCAAGTGAAGCTTACCGGTAAACTGGCGGATGGGACGATTTTTACTAAGAAGGGCGATGATGAGAAGCCTTTTGAGTTCAAAACTGACGAAGAACAAGTCATCGAAGGACTTGATTTGGCTGTGAGAAAGATGAAGAAAGGAGAAGTTGCCTTGGTGACCATCCATCCACAATATGCTTTTGGATCTGCTGCCTCGACTCAAGATCTAGCTACAGTGGCTGCAAACTCAACTGTATATTATGAAATTGAGCTGGTTTCGTTCGTCAAAGAAAAAGAATCTTGGGAACTGAGCACACCAGAGAAAATAGAAGCAGCCGGGAAAAAGAAGGAAGAAGGAAATGTTTTGTTCAAAGCTGGAAAATATGACAGAGCATCAAGAAGATATGAACAGGCTGTTCGCTACATTGAATATGATACTTCTTTCAACGATGAGGAGAAGCAACAGAGCAAGGCACTAAAAGTTTCGTGCAACCTCAACAATGCTGCGTGCAAACTGAAGGTTAAAGACTACAGGCAAGCTGAAAAGCTCTGTACAAAGGTGTTGGAACTCGATAGTAGAAATGTGAAAGCTCTCTATAGAAGGGCACAAGCATATATTCAACTTGTTGATCTTGATCTTGCTGAGCAGGATATCAAGAAAGCCCTTGAGATAGACCCAGATAACAGGGAAGTGAAGATCGAATACCGACAGTTGAAGGAAAAAGTGAGAGAATACAACAAGAAAGATGCACAGTTTTATGGCAACATTTTTGCAAAAATGAACAAGTTGGAGCAGGCAAAGTCTGCTAGTGCAGCAGGGAAGCAGGAGGCAGTGCCAATGACCATTGATAGCAAAGCTTGA 1725 44.93 MEDDFQFPSATNVDEEMAIPEDEAESPVLKVGEEKEIGKSGLKKKLVKEGEGWETPDTGDEVQVHYTGTLLDGTKFDSSRDRGTPFKFKLGEGQVIKGWDEGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWHSVKDICQDGGIFKKILVKGDGWDKPKDLDEVLVTYEARLEDGTLISKYDGVEFTVEKGYFCPALATSVKTMKKGEKVLLTVRPQYAFGESGRPAAGEEGAVPPNATLQITLELVSWKAVTDINKDKKVLKKTLKEGEGYDLPNDGAVVQVKLTGKLADGTIFTKKGDDEKPFEFKTDEEQVIEGLDLAVRKMKKGEVALVTIHPQYAFGSAASTQDLATVAANSTVYYEIELVSFVKEKESWELSTPEKIEAAGKKKEEGNVLFKAGKYDRASRRYEQAVRYIEYDTSFNDEEKQQSKALKVSCNLNNAACKLKVKDYRQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNREVKIEYRQLKEKVREYNKKDAQFYGNIFAKMNKLEQAKSASAAGKQEAVPMTIDSKA 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9376241 9379240 + Lag0021577.1 Lac7g1060 613961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g1060 574 Gene3D - 31 149 IPR046357 GO:0003755(InterPro)
Lac7g1060 574 SMART tpr_5 483 516 IPR019734 GO:0005515(InterPro)
Lac7g1060 574 SMART tpr_5 400 433 IPR019734 GO:0005515(InterPro)
Lac7g1060 574 SMART tpr_5 449 482 IPR019734 GO:0005515(InterPro)
Lac7g1060 574 SUPERFAMILY FKBP-like 269 400 - -
Lac7g1060 574 Gene3D - 150 264 IPR046357 GO:0003755(InterPro)
Lac7g1060 574 Gene3D - 265 385 IPR046357 GO:0003755(InterPro)
Lac7g1060 574 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 289 380 IPR001179 GO:0003755(InterPro)
Lac7g1060 574 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 170 261 IPR001179 GO:0003755(InterPro)
Lac7g1060 574 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 53 144 IPR001179 GO:0003755(InterPro)
Lac7g1060 574 Gene3D Tetratricopeptide repeat domain 386 543 IPR011990 GO:0005515(InterPro)
Lac7g1060 574 FunFam Peptidylprolyl isomerase 388 543 - -
Lac7g1060 574 FunFam Peptidylprolyl isomerase 32 150 - -
Lac7g1060 574 FunFam Peptidylprolyl isomerase 265 385 - -
Lac7g1060 574 PANTHER PEPTIDYLPROLYL ISOMERASE 145 262 IPR050754 -
Lac7g1060 574 Pfam Tetratricopeptide repeat 483 516 IPR019734 GO:0005515(InterPro)
Lac7g1060 574 SUPERFAMILY FKBP-like 151 266 - -
Lac7g1060 574 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 292 383 IPR001179 GO:0003755(InterPro)
Lac7g1060 574 Coils Coil 516 536 - -
Lac7g1060 574 SUPERFAMILY TPR-like 394 549 IPR011990 GO:0005515(InterPro)
Lac7g1060 574 MobiDBLite consensus disorder prediction 26 55 - -
Lac7g1060 574 ProSiteProfiles TPR repeat profile. 483 516 IPR019734 GO:0005515(InterPro)
Lac7g1060 574 SUPERFAMILY FKBP-like 28 160 - -
Lac7g1060 574 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 175 264 IPR001179 GO:0003755(InterPro)
Lac7g1060 574 FunFam Peptidylprolyl isomerase 151 264 - -
Lac7g1060 574 MobiDBLite consensus disorder prediction 1 60 - -
Lac7g1060 574 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 59 147 IPR001179 GO:0003755(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0507 Lac-Chr11:5273788 Lac7g1060 Lac-Chr7:9376241 2.70E-09 dispersed
Lac12g0071 Lac-Chr12:827872 Lac7g1060 Lac-Chr7:9376241 3.20E-17 dispersed
Lac1g1932 Lac-Chr1:40979067 Lac7g1060 Lac-Chr7:9376241 2.10E-65 dispersed
Lac4g1932 Lac-Chr4:38774699 Lac7g1060 Lac-Chr7:9376241 6.60E-243 dispersed
Lac5g2847 Lac-Chr5:46796846 Lac7g1060 Lac-Chr7:9376241 3.00E-19 dispersed
Lac7g1060 Lac-Chr7:9376241 Lac8g2944 Lac-Chr8:46416239 1.40E-19 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g1060 K09571 - csv:101210041 1007.67