Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g1062 ATGGAGAAGGAGTTCTTCATGAACGATGGATGCGGTTTTTATGGGATGGAAATCCAACACAATGAGCTGAATTCGAGTGTGTTGTTCAATCCCAATTGGGAAAACTCGATGGATCAGAGCGATCTCTTTGAGTCTACTTTGAGCTCGATTGTGTCTTCTCCGGCGAATTCCCACGCCGGAACTGTCATCGGCGGCGGTGGCGGTGGCGGTGGTGACAATTTGATGATGCGAGAATTGATTGGAAGGCTTGGGAGCATTTGTAATTCTGGTGAGATTTCGCCTCATTCTTACATTGGTGGAACGAACAACAACAGTACCAACACTTCTTGTTACAATACGCCTTTGAATTCTCCACCGAAGCTCAATTTGTCGTCGATCATGGAGTCTCAGATGAGAGGGAATTTATCAGTCGGTGGCAATTTGATTCCTCATCATCAAAATCTGGCCCCATTTTCGGCTGATCCAGGTTTTGCTGAGAGGGCTGCGAGATTTTCTTGTTTCGGGAACAAGAATCTTGCGGTGAATGGGCAATTGGGTTCTAATGAAACTCAAGAATTGGGTAACAGATCAATGGCTGGAACTGGAGTGGAATCTGGAAAGCTTTCTAGAGTTTCAAGTAACAAATCCTTCAATGTTGGTGGAATTGGATCTCAAATGGGCGCTCAGGAAGGCAACCAGAGCCCGGTACAGAAGGGGAATTCAATGCCCAATAAGAAAGTACTGAACAGGTTTTCGAGGTCTTCGACCCCCGAAAATGCCGGTGATTCGAGGGAGGGATCTTCAGTTTCAGAGCAGATTACAGGTGGGGAATTGGGTTTCAAAGGCAAAGCTGAAGTCAACACTAGGAAAAGGAAATCAGTTCACACTGGTGAAGCAAAAGATGTGAAGGCTGCAGGAGAGAACCATGAATTAAATGGAAAGAAAATCAAACCAGAGGAAGTTTCTAAGAAAGAGATGGATGCTGCAAAGGGGAAGGCAGAAGCAAAAGATGGCACAAAAGCTTCAGGGGATGCAAATCAGAAGCAAAACAATGATAATTCAAAGCCTCCAGAGCCTCCAAAGGATTACATCCATGTTAGAGCTAGAAGGGGTCAAGCCACAGATAGCCACAGTTTGGCTGAAAGAGTCCGACGAGAGAAAATCAGCAAACGGATGAAGTTTCTTCAAGATCTCGTCCCCGGTTGCAATAAGGTAACTGGGAAGGCAGTCATGCTGGATGAAATTATAAACTATGTTCAATCTTTGCAACGCCAAGTTGAGTTTCTTTCAATGAAATTGGCAACTGTCAATCCAAGAATGGATTTTAACATGGAGAGCCTTTTGTCAAAGGATATCTTCAAAGGTCCCGGTTCGTCACCGCATACGATTTACCCTGTAGATTCATCTGTGCCCACATTCGCATATGAATATCAATCTATGCACATGCCTCCTCTTCATAGTGGCATTTCTAATGGGACAGAGAAGCAATTCCCTGTTGCCTCAGCAAGCGATGTGATGCAAAGAAATCTAAGCGGGCAAATGCCTAGCGGGTACAGTGAAGTCGGGAATGGAATTCAGATTTCAAAGTTCTGGGAGGATGAACTCCACACTGTAGTTCAGATGGGTTATGGACAAAACCAGCTACAGAATCCTAATGGCTCTATGGCTGCAGATGAGATGAAAAGTGAATTGTAA 1674 44.68 MEKEFFMNDGCGFYGMEIQHNELNSSVLFNPNWENSMDQSDLFESTLSSIVSSPANSHAGTVIGGGGGGGGDNLMMRELIGRLGSICNSGEISPHSYIGGTNNNSTNTSCYNTPLNSPPKLNLSSIMESQMRGNLSVGGNLIPHHQNLAPFSADPGFAERAARFSCFGNKNLAVNGQLGSNETQELGNRSMAGTGVESGKLSRVSSNKSFNVGGIGSQMGAQEGNQSPVQKGNSMPNKKVLNRFSRSSTPENAGDSREGSSVSEQITGGELGFKGKAEVNTRKRKSVHTGEAKDVKAAGENHELNGKKIKPEEVSKKEMDAAKGKAEAKDGTKASGDANQKQNNDNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMESLLSKDIFKGPGSSPHTIYPVDSSVPTFAYEYQSMHMPPLHSGISNGTEKQFPVASASDVMQRNLSGQMPSGYSEVGNGIQISKFWEDELHTVVQMGYGQNQLQNPNGSMAADEMKSEL 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9396666 9399030 - Lag0021579.1 Lac7g1062 613963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g1062 557 SMART finulus 371 421 IPR011598 GO:0046983(InterPro)
Lac7g1062 557 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 365 415 IPR011598 GO:0046983(InterPro)
Lac7g1062 557 MobiDBLite consensus disorder prediction 276 334 - -
Lac7g1062 557 MobiDBLite consensus disorder prediction 182 356 - -
Lac7g1062 557 CDD bHLH_AtBPE_like 355 440 - -
Lac7g1062 557 MobiDBLite consensus disorder prediction 335 349 - -
Lac7g1062 557 Gene3D - 362 436 IPR036638 GO:0046983(InterPro)
Lac7g1062 557 Pfam Helix-loop-helix DNA-binding domain 369 416 IPR011598 GO:0046983(InterPro)
Lac7g1062 557 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 363 435 IPR036638 GO:0046983(InterPro)
Lac7g1062 557 FunFam Basic helix-loop-helix transcription factor 362 435 - -
Lac7g1062 557 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 149 513 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Lac7g1062 557 MobiDBLite consensus disorder prediction 199 267 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1936 Lac-Chr4:38823496 Lac7g1062 Lac-Chr7:9396666 2.50E-65 dispersed
Lac6g0062 Lac-Chr6:510509 Lac7g1062 Lac-Chr7:9396666 6.70E-34 dispersed
Lac6g2849 Lac-Chr6:46113787 Lac7g1062 Lac-Chr7:9396666 3.40E-15 dispersed
Lac7g1062 Lac-Chr7:9396666 Lac8g2147 Lac-Chr8:39867065 1.40E-48 dispersed
Lac7g1062 Lac-Chr7:9396666 Lac13g0418 Lac-Chr13:2925494 1.50E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24176 PF00010 HLH 1.20E-05 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g1062 - - - 0.0