Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac7g1062 | ATGGAGAAGGAGTTCTTCATGAACGATGGATGCGGTTTTTATGGGATGGAAATCCAACACAATGAGCTGAATTCGAGTGTGTTGTTCAATCCCAATTGGGAAAACTCGATGGATCAGAGCGATCTCTTTGAGTCTACTTTGAGCTCGATTGTGTCTTCTCCGGCGAATTCCCACGCCGGAACTGTCATCGGCGGCGGTGGCGGTGGCGGTGGTGACAATTTGATGATGCGAGAATTGATTGGAAGGCTTGGGAGCATTTGTAATTCTGGTGAGATTTCGCCTCATTCTTACATTGGTGGAACGAACAACAACAGTACCAACACTTCTTGTTACAATACGCCTTTGAATTCTCCACCGAAGCTCAATTTGTCGTCGATCATGGAGTCTCAGATGAGAGGGAATTTATCAGTCGGTGGCAATTTGATTCCTCATCATCAAAATCTGGCCCCATTTTCGGCTGATCCAGGTTTTGCTGAGAGGGCTGCGAGATTTTCTTGTTTCGGGAACAAGAATCTTGCGGTGAATGGGCAATTGGGTTCTAATGAAACTCAAGAATTGGGTAACAGATCAATGGCTGGAACTGGAGTGGAATCTGGAAAGCTTTCTAGAGTTTCAAGTAACAAATCCTTCAATGTTGGTGGAATTGGATCTCAAATGGGCGCTCAGGAAGGCAACCAGAGCCCGGTACAGAAGGGGAATTCAATGCCCAATAAGAAAGTACTGAACAGGTTTTCGAGGTCTTCGACCCCCGAAAATGCCGGTGATTCGAGGGAGGGATCTTCAGTTTCAGAGCAGATTACAGGTGGGGAATTGGGTTTCAAAGGCAAAGCTGAAGTCAACACTAGGAAAAGGAAATCAGTTCACACTGGTGAAGCAAAAGATGTGAAGGCTGCAGGAGAGAACCATGAATTAAATGGAAAGAAAATCAAACCAGAGGAAGTTTCTAAGAAAGAGATGGATGCTGCAAAGGGGAAGGCAGAAGCAAAAGATGGCACAAAAGCTTCAGGGGATGCAAATCAGAAGCAAAACAATGATAATTCAAAGCCTCCAGAGCCTCCAAAGGATTACATCCATGTTAGAGCTAGAAGGGGTCAAGCCACAGATAGCCACAGTTTGGCTGAAAGAGTCCGACGAGAGAAAATCAGCAAACGGATGAAGTTTCTTCAAGATCTCGTCCCCGGTTGCAATAAGGTAACTGGGAAGGCAGTCATGCTGGATGAAATTATAAACTATGTTCAATCTTTGCAACGCCAAGTTGAGTTTCTTTCAATGAAATTGGCAACTGTCAATCCAAGAATGGATTTTAACATGGAGAGCCTTTTGTCAAAGGATATCTTCAAAGGTCCCGGTTCGTCACCGCATACGATTTACCCTGTAGATTCATCTGTGCCCACATTCGCATATGAATATCAATCTATGCACATGCCTCCTCTTCATAGTGGCATTTCTAATGGGACAGAGAAGCAATTCCCTGTTGCCTCAGCAAGCGATGTGATGCAAAGAAATCTAAGCGGGCAAATGCCTAGCGGGTACAGTGAAGTCGGGAATGGAATTCAGATTTCAAAGTTCTGGGAGGATGAACTCCACACTGTAGTTCAGATGGGTTATGGACAAAACCAGCTACAGAATCCTAATGGCTCTATGGCTGCAGATGAGATGAAAAGTGAATTGTAA | 1674 | 44.68 | MEKEFFMNDGCGFYGMEIQHNELNSSVLFNPNWENSMDQSDLFESTLSSIVSSPANSHAGTVIGGGGGGGGDNLMMRELIGRLGSICNSGEISPHSYIGGTNNNSTNTSCYNTPLNSPPKLNLSSIMESQMRGNLSVGGNLIPHHQNLAPFSADPGFAERAARFSCFGNKNLAVNGQLGSNETQELGNRSMAGTGVESGKLSRVSSNKSFNVGGIGSQMGAQEGNQSPVQKGNSMPNKKVLNRFSRSSTPENAGDSREGSSVSEQITGGELGFKGKAEVNTRKRKSVHTGEAKDVKAAGENHELNGKKIKPEEVSKKEMDAAKGKAEAKDGTKASGDANQKQNNDNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMESLLSKDIFKGPGSSPHTIYPVDSSVPTFAYEYQSMHMPPLHSGISNGTEKQFPVASASDVMQRNLSGQMPSGYSEVGNGIQISKFWEDELHTVVQMGYGQNQLQNPNGSMAADEMKSEL | 557 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 9396666 | 9399030 | - | Lag0021579.1 | Lac7g1062 | 613963 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac7g1062 | 557 | SMART | finulus | 371 | 421 | IPR011598 | GO:0046983(InterPro) | |
Lac7g1062 | 557 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 365 | 415 | IPR011598 | GO:0046983(InterPro) | |
Lac7g1062 | 557 | MobiDBLite | consensus disorder prediction | 276 | 334 | - | - | |
Lac7g1062 | 557 | MobiDBLite | consensus disorder prediction | 182 | 356 | - | - | |
Lac7g1062 | 557 | CDD | bHLH_AtBPE_like | 355 | 440 | - | - | |
Lac7g1062 | 557 | MobiDBLite | consensus disorder prediction | 335 | 349 | - | - | |
Lac7g1062 | 557 | Gene3D | - | 362 | 436 | IPR036638 | GO:0046983(InterPro) | |
Lac7g1062 | 557 | Pfam | Helix-loop-helix DNA-binding domain | 369 | 416 | IPR011598 | GO:0046983(InterPro) | |
Lac7g1062 | 557 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 363 | 435 | IPR036638 | GO:0046983(InterPro) | |
Lac7g1062 | 557 | FunFam | Basic helix-loop-helix transcription factor | 362 | 435 | - | - | |
Lac7g1062 | 557 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 149 | 513 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Lac7g1062 | 557 | MobiDBLite | consensus disorder prediction | 199 | 267 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac4g1936 | Lac-Chr4:38823496 | Lac7g1062 | Lac-Chr7:9396666 | 2.50E-65 | dispersed | |
Lac6g0062 | Lac-Chr6:510509 | Lac7g1062 | Lac-Chr7:9396666 | 6.70E-34 | dispersed | |
Lac6g2849 | Lac-Chr6:46113787 | Lac7g1062 | Lac-Chr7:9396666 | 3.40E-15 | dispersed | |
Lac7g1062 | Lac-Chr7:9396666 | Lac8g2147 | Lac-Chr8:39867065 | 1.40E-48 | dispersed | |
Lac7g1062 | Lac-Chr7:9396666 | Lac13g0418 | Lac-Chr13:2925494 | 1.50E-50 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24176 | PF00010 | HLH | 1.20E-05 | No_clan | Lac | TF |
Pathway information
