Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g1072 ATGGAGAAGGAAAAACCCCAAAGCCATTCCGGTGGATTTCTACCTCCATCGAGTCGTTACTCAGGTCTTTCACCAACTGGGAGCAATTTCAATGGAAAATCTGAGGCAACCTCGTCTTCAATGTCGCTTCCTCCAATGGCTTCAAGTTCTAATTCCGATTCAAGTCAATTTGGTCGTGGAATGTCTACTGATTCTAACCGGTTCAGCCATGATATTAGTCGGATGCCTGATAACCCGCCGAGAAATATTGGTCACAGACGCGCTCATTCAGAAATACTGACCCTTCCTGATGATATTTGTTTCGACAGTGACCTTGGTGTCATTGGCAGTGCTGATGGCCCTTCTCTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTCGACATGGACAAATTCAATTCTTCAACTGCTACCTCTGCAATACAAGTTGGCGAGTCATCTTCTGCTTTTGTAGAAGCAAGATCAACTCCTACTTCAGCAATTGGTGCAGCAACTTCTAAAGACGATGCTTCCATTGGTTTGAAGGAAAGGCCAAGAGTTAGGCACCAGCATAGCCAGTCCATGGATGGCTTGACAACCATAAAGCCTGAGATGCTTGTCTCAGGGTCTGAAGAAGTCTCTGCAGCTGATTCCAAGAAAGCCATGTCAGCTACAAAGCTTGCTGAGCTTGCACTAATTGACCCCAAACGTGCAAAGAGGATATGGGCAAATAGACAGTCAGCTGCTAGGTCAAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAACGGAAAGTTCAGACTCTGCAGACAGAGGCAACTTCTTTATCTGCTCAGTTAACCCTCTTACAGAGAGACACAAACGGTCTTACTGCTGAGAACAGTGAACTAAAGCTGCGGTTGCAGACAATGGAGCAGCAGGTTCACCTACAAGATGGTAAGGACCTCTATAATTTCATTTTTAAGTTAAAGACTGGGCTTCTCCTTGGGTGGACTGGTTCTCTGAGAAGGACTGAGCTGTGGTGTGACACTTGTCTGGATGTTGGAGGCAAGCGCTTGGATGGGCTAAGTAGTTGGCACAGGGCTCTTGCCTTGCCATTCATTATCTTGAAAACATTGGGTTATGCTTGCTTGAGATTTGGAGGGTTATTTGAAGCATTTGGACAGTACAAGACGGGCGTCCATGACTCTTCCCTTTGTCTCTCACCCTGGGCAAGGGATGCCCTTTTCTCTCTAAATGAAGCACTCAAAGAGGAAATTCAGCATTTGAAAGTGCTTACTGGCCAATCAATCCCAAATGGTGGATCAATGACAAACTTTGCTTCCTTTGGAGCTGGCCAACAATTTTACCCAAACAATCAAGCCATGCACACTTTGTTAACTGCTCAGCAGTTTCAGCAACTTCATATCCACTCACAGCAACAACAACATTTCCAGTACCATCAGATGCATCAGCTTCAGCAACAACCAACTGGAGACATCAAAATGAAAGGTTCGACTTCTTCTCCAAGTCCGAAAGACAACAACACATCCAATTCGTCCTCTCCCACTCGTTGA 1542 45.4 MEKEKPQSHSGGFLPPSSRYSGLSPTGSNFNGKSEATSSSMSLPPMASSSNSDSSQFGRGMSTDSNRFSHDISRMPDNPPRNIGHRRAHSEILTLPDDICFDSDLGVIGSADGPSLSDDTEEDLLSMYLDMDKFNSSTATSAIQVGESSSAFVEARSTPTSAIGAATSKDDASIGLKERPRVRHQHSQSMDGLTTIKPEMLVSGSEEVSAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDGKDLYNFIFKLKTGLLLGWTGSLRRTELWCDTCLDVGGKRLDGLSSWHRALALPFIILKTLGYACLRFGGLFEAFGQYKTGVHDSSLCLSPWARDALFSLNEALKEEIQHLKVLTGQSIPNGGSMTNFASFGAGQQFYPNNQAMHTLLTAQQFQQLHIHSQQQQHFQYHQMHQLQQQPTGDIKMKGSTSSPSPKDNNTSNSSSPTR 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9539670 9543712 - Lag0021589.1 Lac7g1072 613973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g1072 513 MobiDBLite consensus disorder prediction 1 85 - -
Lac7g1072 513 MobiDBLite consensus disorder prediction 11 69 - -
Lac7g1072 513 FunFam probable transcription factor PosF21 230 283 - -
Lac7g1072 513 SMART brlzneu 227 291 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac7g1072 513 Pfam bZIP transcription factor 231 285 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac7g1072 513 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 69 493 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac7g1072 513 Coils Coil 247 302 - -
Lac7g1072 513 CDD bZIP_plant_RF2 232 281 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac7g1072 513 SUPERFAMILY Leucine zipper domain 231 282 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac7g1072 513 MobiDBLite consensus disorder prediction 471 513 - -
Lac7g1072 513 Gene3D - 230 283 - -
Lac7g1072 513 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 229 292 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g1072 Lac-Chr7:9539670 Lac8g1685 Lac-Chr8:34972939 7.50E-36 dispersed
Lac7g1072 Lac-Chr7:9539670 Lac7g1075 Lac-Chr7:9582201 3.10E-183 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24177 PF00170 bZIP_1 1.80E-08 CL0018 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g1072 - - - 0.0