Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac7g1072 | ATGGAGAAGGAAAAACCCCAAAGCCATTCCGGTGGATTTCTACCTCCATCGAGTCGTTACTCAGGTCTTTCACCAACTGGGAGCAATTTCAATGGAAAATCTGAGGCAACCTCGTCTTCAATGTCGCTTCCTCCAATGGCTTCAAGTTCTAATTCCGATTCAAGTCAATTTGGTCGTGGAATGTCTACTGATTCTAACCGGTTCAGCCATGATATTAGTCGGATGCCTGATAACCCGCCGAGAAATATTGGTCACAGACGCGCTCATTCAGAAATACTGACCCTTCCTGATGATATTTGTTTCGACAGTGACCTTGGTGTCATTGGCAGTGCTGATGGCCCTTCTCTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTCGACATGGACAAATTCAATTCTTCAACTGCTACCTCTGCAATACAAGTTGGCGAGTCATCTTCTGCTTTTGTAGAAGCAAGATCAACTCCTACTTCAGCAATTGGTGCAGCAACTTCTAAAGACGATGCTTCCATTGGTTTGAAGGAAAGGCCAAGAGTTAGGCACCAGCATAGCCAGTCCATGGATGGCTTGACAACCATAAAGCCTGAGATGCTTGTCTCAGGGTCTGAAGAAGTCTCTGCAGCTGATTCCAAGAAAGCCATGTCAGCTACAAAGCTTGCTGAGCTTGCACTAATTGACCCCAAACGTGCAAAGAGGATATGGGCAAATAGACAGTCAGCTGCTAGGTCAAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAACGGAAAGTTCAGACTCTGCAGACAGAGGCAACTTCTTTATCTGCTCAGTTAACCCTCTTACAGAGAGACACAAACGGTCTTACTGCTGAGAACAGTGAACTAAAGCTGCGGTTGCAGACAATGGAGCAGCAGGTTCACCTACAAGATGGTAAGGACCTCTATAATTTCATTTTTAAGTTAAAGACTGGGCTTCTCCTTGGGTGGACTGGTTCTCTGAGAAGGACTGAGCTGTGGTGTGACACTTGTCTGGATGTTGGAGGCAAGCGCTTGGATGGGCTAAGTAGTTGGCACAGGGCTCTTGCCTTGCCATTCATTATCTTGAAAACATTGGGTTATGCTTGCTTGAGATTTGGAGGGTTATTTGAAGCATTTGGACAGTACAAGACGGGCGTCCATGACTCTTCCCTTTGTCTCTCACCCTGGGCAAGGGATGCCCTTTTCTCTCTAAATGAAGCACTCAAAGAGGAAATTCAGCATTTGAAAGTGCTTACTGGCCAATCAATCCCAAATGGTGGATCAATGACAAACTTTGCTTCCTTTGGAGCTGGCCAACAATTTTACCCAAACAATCAAGCCATGCACACTTTGTTAACTGCTCAGCAGTTTCAGCAACTTCATATCCACTCACAGCAACAACAACATTTCCAGTACCATCAGATGCATCAGCTTCAGCAACAACCAACTGGAGACATCAAAATGAAAGGTTCGACTTCTTCTCCAAGTCCGAAAGACAACAACACATCCAATTCGTCCTCTCCCACTCGTTGA | 1542 | 45.4 | MEKEKPQSHSGGFLPPSSRYSGLSPTGSNFNGKSEATSSSMSLPPMASSSNSDSSQFGRGMSTDSNRFSHDISRMPDNPPRNIGHRRAHSEILTLPDDICFDSDLGVIGSADGPSLSDDTEEDLLSMYLDMDKFNSSTATSAIQVGESSSAFVEARSTPTSAIGAATSKDDASIGLKERPRVRHQHSQSMDGLTTIKPEMLVSGSEEVSAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDGKDLYNFIFKLKTGLLLGWTGSLRRTELWCDTCLDVGGKRLDGLSSWHRALALPFIILKTLGYACLRFGGLFEAFGQYKTGVHDSSLCLSPWARDALFSLNEALKEEIQHLKVLTGQSIPNGGSMTNFASFGAGQQFYPNNQAMHTLLTAQQFQQLHIHSQQQQHFQYHQMHQLQQQPTGDIKMKGSTSSPSPKDNNTSNSSSPTR | 513 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 9539670 | 9543712 | - | Lag0021589.1 | Lac7g1072 | 613973 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac7g1072 | 513 | MobiDBLite | consensus disorder prediction | 1 | 85 | - | - | |
Lac7g1072 | 513 | MobiDBLite | consensus disorder prediction | 11 | 69 | - | - | |
Lac7g1072 | 513 | FunFam | probable transcription factor PosF21 | 230 | 283 | - | - | |
Lac7g1072 | 513 | SMART | brlzneu | 227 | 291 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac7g1072 | 513 | Pfam | bZIP transcription factor | 231 | 285 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac7g1072 | 513 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 69 | 493 | - | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Lac7g1072 | 513 | Coils | Coil | 247 | 302 | - | - | |
Lac7g1072 | 513 | CDD | bZIP_plant_RF2 | 232 | 281 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac7g1072 | 513 | SUPERFAMILY | Leucine zipper domain | 231 | 282 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac7g1072 | 513 | MobiDBLite | consensus disorder prediction | 471 | 513 | - | - | |
Lac7g1072 | 513 | Gene3D | - | 230 | 283 | - | - | |
Lac7g1072 | 513 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 229 | 292 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac7g1072 | Lac-Chr7:9539670 | Lac8g1685 | Lac-Chr8:34972939 | 7.50E-36 | dispersed | |
Lac7g1072 | Lac-Chr7:9539670 | Lac7g1075 | Lac-Chr7:9582201 | 3.10E-183 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24177 | PF00170 | bZIP_1 | 1.80E-08 | CL0018 | Lac | TF |
Pathway information
