Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac7g1075 | ATGGAGAAGGACAAACCCCAAACCCATTCTGGTGGGTTTCTGCCCCCGTCGAGTCGTTACTCGAGTCTTTCACCAACTTCGAGCAGTTTCAATGGAAAATCTGAGGCAGCTTCGTGTTCAATGTCGCTTCCTCCAATGGCTCCGAGTGCTAATTCCGATTCGGGTCAATTCGGTCGTGGGATTTCCAGCGATTCCAATCGCTTCAGCCATGATGTTAGTCGGATGCCTGATAACCCGCCGAGAAATATTGGTCATAGACGCGCCCATTCAGAAATACTGACCCTGCCTGATGATATTTGTTTTGACAGCGACCTTGGTGTCATTGGCGGTGCTGATGGGCCTTCCTTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGATAAATTCAATTCTTCGACTGCAACCTCTGCAGTACAAGCCGGCGAGTCATCTTCTGCTGTTGTAGAAGCGAGATCGACTCCTACTTCAGCATTTGGAGCTGTAACATCTAAGGATGATGCTGCTGTTGGTTTGAAGGAGAGGCCAAGAGTTAGGCACCAGCACAGCCAGTCCATGGATGGCTTGACAACCATCAAGCCTGAGATGCTTGTCTCAGGGTCTGAAGAAGTCTCTGCAGCTGATTCCAAGAAAGCCATGTCAGCTACAAAGCTTGCTGAGCTTGCTCTGATTGACCCCAAACGTGCAAAGAGGATATGGGCAAATAGACAGTCAGCTGCTAGGTCAAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAACGAAAAGTTCAGACTTTGCAAACAGAGGCAACTTCTTTATCTGCTCAGTTAACCCTCTTACAGAGAGATACGAATGGTCTTACTGCTGAGAACAGTGAACTAAAGCTGAGGTTGCAGACAATGGAGCAGCAGGTTCACCTGCAAGATGCTCTAAATGAAGCACTGAAAGAGGAAATTCAACATTTGAAAGTATTGACTGGCCAAGCAATCCCAAATGGTGGATCAATGACAAACTTTGCTTCCTTTGGAGCTGGCCAACAATTTTACCCAAACAATCAAGCAATGCACACTTTGTTAACTGCTCAGCAGTTTCAGCAACTTCAAATCCACTCACAGCAGCAGCAGCAGCAGCAACAACAACATTTTCAGTACCACCAGCTGCATCAGCTTCAGCAGCCACCAACTGGAGACATCAAAATGAAAGGATCGAGTTCTTCTCCGAATCCGAAAGACAACAACACATCAGATTCGTCCTCTTCCGCTTGTTGA | 1263 | 46.79 | MEKDKPQTHSGGFLPPSSRYSSLSPTSSSFNGKSEAASCSMSLPPMAPSANSDSGQFGRGISSDSNRFSHDVSRMPDNPPRNIGHRRAHSEILTLPDDICFDSDLGVIGGADGPSFSDDTEEDLLSMYLDMDKFNSSTATSAVQAGESSSAVVEARSTPTSAFGAVTSKDDAAVGLKERPRVRHQHSQSMDGLTTIKPEMLVSGSEEVSAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKVLTGQAIPNGGSMTNFASFGAGQQFYPNNQAMHTLLTAQQFQQLQIHSQQQQQQQQQHFQYHQLHQLQQPPTGDIKMKGSSSSPNPKDNNTSDSSSSAC | 420 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 9582201 | 9586315 | - | Lag0021592.1 | Lac7g1075 | 613976 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac7g1075 | 420 | Gene3D | - | 230 | 284 | - | - | |
| Lac7g1075 | 420 | MobiDBLite | consensus disorder prediction | 389 | 420 | - | - | |
| Lac7g1075 | 420 | MobiDBLite | consensus disorder prediction | 11 | 69 | - | - | |
| Lac7g1075 | 420 | FunFam | probable transcription factor PosF21 | 230 | 283 | - | - | |
| Lac7g1075 | 420 | SMART | brlzneu | 227 | 291 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lac7g1075 | 420 | CDD | bZIP_plant_RF2 | 232 | 281 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lac7g1075 | 420 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 69 | 398 | - | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
| Lac7g1075 | 420 | Coils | Coil | 247 | 316 | - | - | |
| Lac7g1075 | 420 | Pfam | bZIP transcription factor | 231 | 285 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lac7g1075 | 420 | MobiDBLite | consensus disorder prediction | 1 | 83 | - | - | |
| Lac7g1075 | 420 | SUPERFAMILY | Leucine zipper domain | 231 | 282 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lac7g1075 | 420 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 229 | 292 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac6g2448 | Lac-Chr6:42237794 | Lac7g1075 | Lac-Chr7:9582201 | 1.10E-19 | dispersed | |
| Lac7g1075 | Lac-Chr7:9582201 | Lac8g1685 | Lac-Chr8:34972939 | 1.20E-42 | dispersed | |
| Lac7g1072 | Lac-Chr7:9539670 | Lac7g1075 | Lac-Chr7:9582201 | 3.10E-183 | proximal |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 24178 | PF00170 | bZIP_1 | 1.20E-08 | CL0018 | Lac | TF |
Pathway information