Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g1094 ATGTACCAATCCACTTCCTCCTCTTCTTCCTCTCAGAAATCCATGGTTCCCGGTCACGGCGGCGCCGGTGTCGGCGGAGGCGGCGGCGGTGGCGGTGGTGGTGGTCTCACTCGGTACGGCTCAGCGCCGGGCTCTCTGCTGACCTCGGCGGTGGATTCCGTGATCGCGAGTCGGCATCCGGAGGCTGCCGCCGCCTCGCTCCGTACGCCGCCGTCGTTCGGCGGCCACTACTTCTCCTCTGCGGACTCCTCCGTCGTGGAGTCGTCTCGGAAGGTTGTTCAGTCCTCGTCGACGTCCAACGATCTGAAGTCGTCGTCGTCGGCCGCGGCGGCCGCCTTGCAACGGACGTACGGAATCCACGATTTGGCACTGGGGGATTTCTCGACGGCCAGAAATTTTAGTAATAATGGTGGTCAATCGTCTTCGTCTTCGCCGTTGGTTCGCCAGAGAAGCTCGCCGGCCGGATTTCTCGGCCATCTCTCCGTCGCTGAAGCAACCGGAGGGTTTTCATTAACGAGAGGAGGGAGCTACAGCTCACAAAATGGGAATGGAGGAAGGGTGAAGTCGCAGCTGAGCTTCAGTGGGCAAGAGTCGCTGTCTGGAATGAGCGAGAGCGTTGTGGAAGGCACTGTGAACTCCTCCACCAACGCCAACACCACTCATTCTCATTCCTTTGGCTTCGCCATGGACGACTCTTGGGACACCTCCAATAATAATACTAACAACTCCATTGTCTTTGCTGCCCCTTCTTCTCATTCTTCCAAGCGATCCAAGCACCATTCTGATGCTGACTTCTTCAATTGCCTCACTGCTCTCGAGTCTCAGTTTAGCCTGCCGCAGACAAGTTTGGAAATGGCAACTGTGGAGAGGCTGCTGCAAATTCCCGAAGACTCTGTTCCTTGTAAGATCCGAGCCAAGCGCGGCTGCGCGACTCACCCTCGGAGCATCGCCGAAAGGGAGAGGAGAACTAGAATCAGTGGAAAATTGAAGAAACTTCAAGAGCTTGTTCCCAACATGGATAAGCAAACAAGCTATGCAGACATGTTGGACTTAGCAGTGCAGCATATCAAGGGACTTCAAAATCAAATTCAGAAGCTTAACAAAGAAGTTGAGAATTGCACCTGTGGAAGCAAAGAATCCTCATAA 1146 54.8 MYQSTSSSSSSQKSMVPGHGGAGVGGGGGGGGGGGLTRYGSAPGSLLTSAVDSVIASRHPEAAAASLRTPPSFGGHYFSSADSSVVESSRKVVQSSSTSNDLKSSSSAAAAALQRTYGIHDLALGDFSTARNFSNNGGQSSSSSPLVRQRSSPAGFLGHLSVAEATGGFSLTRGGSYSSQNGNGGRVKSQLSFSGQESLSGMSESVVEGTVNSSTNANTTHSHSFGFAMDDSWDTSNNNTNNSIVFAAPSSHSSKRSKHHSDADFFNCLTALESQFSLPQTSLEMATVERLLQIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVQHIKGLQNQIQKLNKEVENCTCGSKESS 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9899548 9908830 + Lag0021611.1 Lac7g1094 613995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g1094 381 Coils Coil 349 376 - -
Lac7g1094 381 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 309 359 IPR011598 GO:0046983(InterPro)
Lac7g1094 381 MobiDBLite consensus disorder prediction 1 42 - -
Lac7g1094 381 SMART finulus 315 365 IPR011598 GO:0046983(InterPro)
Lac7g1094 381 MobiDBLite consensus disorder prediction 1 16 - -
Lac7g1094 381 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 102 368 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lac7g1094 381 Pfam Helix-loop-helix DNA-binding domain 315 360 IPR011598 GO:0046983(InterPro)
Lac7g1094 381 Gene3D - 310 378 IPR036638 GO:0046983(InterPro)
Lac7g1094 381 FunFam Transcription factor bHLH130 family 310 378 - -
Lac7g1094 381 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 312 372 IPR036638 GO:0046983(InterPro)
Lac7g1094 381 CDD bHLH_AtbHLH_like 314 366 IPR045239 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g1094 Lac-Chr7:9899548 Lac9g2847 Lac-Chr9:46458351 1.20E-27 dispersed
Lac7g1094 Lac-Chr7:9899548 Lac10g2541 Lac-Chr10:39388724 4.00E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24179 PF00010 HLH 5.40E-09 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g1094 - - - 0.0