Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac7g1094 | ATGTACCAATCCACTTCCTCCTCTTCTTCCTCTCAGAAATCCATGGTTCCCGGTCACGGCGGCGCCGGTGTCGGCGGAGGCGGCGGCGGTGGCGGTGGTGGTGGTCTCACTCGGTACGGCTCAGCGCCGGGCTCTCTGCTGACCTCGGCGGTGGATTCCGTGATCGCGAGTCGGCATCCGGAGGCTGCCGCCGCCTCGCTCCGTACGCCGCCGTCGTTCGGCGGCCACTACTTCTCCTCTGCGGACTCCTCCGTCGTGGAGTCGTCTCGGAAGGTTGTTCAGTCCTCGTCGACGTCCAACGATCTGAAGTCGTCGTCGTCGGCCGCGGCGGCCGCCTTGCAACGGACGTACGGAATCCACGATTTGGCACTGGGGGATTTCTCGACGGCCAGAAATTTTAGTAATAATGGTGGTCAATCGTCTTCGTCTTCGCCGTTGGTTCGCCAGAGAAGCTCGCCGGCCGGATTTCTCGGCCATCTCTCCGTCGCTGAAGCAACCGGAGGGTTTTCATTAACGAGAGGAGGGAGCTACAGCTCACAAAATGGGAATGGAGGAAGGGTGAAGTCGCAGCTGAGCTTCAGTGGGCAAGAGTCGCTGTCTGGAATGAGCGAGAGCGTTGTGGAAGGCACTGTGAACTCCTCCACCAACGCCAACACCACTCATTCTCATTCCTTTGGCTTCGCCATGGACGACTCTTGGGACACCTCCAATAATAATACTAACAACTCCATTGTCTTTGCTGCCCCTTCTTCTCATTCTTCCAAGCGATCCAAGCACCATTCTGATGCTGACTTCTTCAATTGCCTCACTGCTCTCGAGTCTCAGTTTAGCCTGCCGCAGACAAGTTTGGAAATGGCAACTGTGGAGAGGCTGCTGCAAATTCCCGAAGACTCTGTTCCTTGTAAGATCCGAGCCAAGCGCGGCTGCGCGACTCACCCTCGGAGCATCGCCGAAAGGGAGAGGAGAACTAGAATCAGTGGAAAATTGAAGAAACTTCAAGAGCTTGTTCCCAACATGGATAAGCAAACAAGCTATGCAGACATGTTGGACTTAGCAGTGCAGCATATCAAGGGACTTCAAAATCAAATTCAGAAGCTTAACAAAGAAGTTGAGAATTGCACCTGTGGAAGCAAAGAATCCTCATAA | 1146 | 54.8 | MYQSTSSSSSSQKSMVPGHGGAGVGGGGGGGGGGGLTRYGSAPGSLLTSAVDSVIASRHPEAAAASLRTPPSFGGHYFSSADSSVVESSRKVVQSSSTSNDLKSSSSAAAAALQRTYGIHDLALGDFSTARNFSNNGGQSSSSSPLVRQRSSPAGFLGHLSVAEATGGFSLTRGGSYSSQNGNGGRVKSQLSFSGQESLSGMSESVVEGTVNSSTNANTTHSHSFGFAMDDSWDTSNNNTNNSIVFAAPSSHSSKRSKHHSDADFFNCLTALESQFSLPQTSLEMATVERLLQIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVQHIKGLQNQIQKLNKEVENCTCGSKESS | 381 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 9899548 | 9908830 | + | Lag0021611.1 | Lac7g1094 | 613995 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac7g1094 | 381 | Coils | Coil | 349 | 376 | - | - | |
Lac7g1094 | 381 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 309 | 359 | IPR011598 | GO:0046983(InterPro) | |
Lac7g1094 | 381 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Lac7g1094 | 381 | SMART | finulus | 315 | 365 | IPR011598 | GO:0046983(InterPro) | |
Lac7g1094 | 381 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Lac7g1094 | 381 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 102 | 368 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Lac7g1094 | 381 | Pfam | Helix-loop-helix DNA-binding domain | 315 | 360 | IPR011598 | GO:0046983(InterPro) | |
Lac7g1094 | 381 | Gene3D | - | 310 | 378 | IPR036638 | GO:0046983(InterPro) | |
Lac7g1094 | 381 | FunFam | Transcription factor bHLH130 family | 310 | 378 | - | - | |
Lac7g1094 | 381 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 312 | 372 | IPR036638 | GO:0046983(InterPro) | |
Lac7g1094 | 381 | CDD | bHLH_AtbHLH_like | 314 | 366 | IPR045239 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac7g1094 | Lac-Chr7:9899548 | Lac9g2847 | Lac-Chr9:46458351 | 1.20E-27 | dispersed | |
Lac7g1094 | Lac-Chr7:9899548 | Lac10g2541 | Lac-Chr10:39388724 | 4.00E-34 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24179 | PF00010 | HLH | 5.40E-09 | No_clan | Lac | TF |
Pathway information
