Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g1198 ATGGCAAACACGATGGCTAGGTCTTTTCTGCAGGTAGCTGCTACGGAAGAGGTGGCTTCCCCCTCCGAGTGGTTCAGATTGAAGGATTGGATAAAACCCTTTGTATCGTCCCTACAGGTTATATTGAAGATAATCAAGCACTGCAAGGAGTTTTCACCAGCCCTTGTGACTGGGCAACTTCTTGGGTTAGATGTTGGTAGCGTTCTTGAAGTCACTAATTGCTTTCCCTTCCCGACTCGGGAGGAGGATGAGGAGATTGAAGCAGATGGTGCTAATTACCAACTTGAAATGATGAGATGTCTGAGAGAAGTCAATGTTGACAATAATACCGTTGGATGGTATCAGTCAACCTTCTTAGGTTCATATCAGACTGTAGAGCTGATCGAGACCTTTATGAATTATCAGGAAAATATTAGGCGGTGTGTCTGCATAATTTATGACCCATCAAGATCTAATCAAGGTGTCTTGGCTCTCAAAGCATTGAAGCTTTCAGATTCTTTTATGGAGCTTTACCGCAGCAACAACTTTACAGGAGAAAAGTTGAGGGAAAAGAACTTGTCGTGGGTGGATATTTTTGAAGAAATACCTATCAAAGTTTCAAACTCAGCCCTCATTAGTGCTTTTATGACGGAGCTTGAAGCTGACTCTCCAGTCACCCAGTGTGATTATGACCGCCTGCAACTTTCAACTAATCCATTTATGGAGAGGAATGTGGAATTTCTGATTGAATGTATGGATGATTTGTCTGTGGAGCAGCAGAAGTTCCAATTCTATTATCGGAGCCTGACCCGTCAGCAAGCTCAGCAGCAGGCATGGCTTCAGAAGAGAAGGGCCGAGAACATGACGAGGAAGGCAGCAGGAGAAGAACCTCTCCCTGAGGAAGATCCTGCAAACCCCATCTTTAAACCACTCCCTGAGCCATCACGTTTGGATAGCTATCTCATAACGAATCAAATAGCAAACTACTGCAACCAAATTAACGGGGTTGCTGGACAGAGTTTCAACAGACTTCATTTGATGAAGGCTTTGCATGACAATTAA 1041 43.9 MANTMARSFLQVAATEEVASPSEWFRLKDWIKPFVSSLQVILKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIETFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEADSPVTQCDYDRLQLSTNPFMERNVEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQAWLQKRRAENMTRKAAGEEPLPEEDPANPIFKPLPEPSRLDSYLITNQIANYCNQINGVAGQSFNRLHLMKALHDN 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11104479 11109381 - Lag0021715.1 Lac7g1198 614099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g1198 346 Gene3D Cytidine Deaminase, domain 2 3 223 - -
Lac7g1198 346 ProSiteProfiles MPN domain profile. 34 167 IPR037518 -
Lac7g1198 346 CDD MPN_eIF3h 39 295 IPR027524 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Lac7g1198 346 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 22 337 IPR050242 GO:0003743(PANTHER)|GO:0005829(PANTHER)|GO:0005852(PANTHER)|GO:0008237(PANTHER)|GO:0016282(PANTHER)|GO:0042788(PANTHER)
Lac7g1198 346 SMART pad1_6 33 166 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Lac7g1198 346 Pfam C-terminal region of eIF3h 152 344 IPR045810 -
Lac7g1198 346 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 33 346 IPR027524 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Lac7g1198 346 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 39 136 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Lac7g1198 346 FunFam Eukaryotic translation initiation factor 3 subunit H 4 222 - -
Lac7g1198 346 MobiDBLite consensus disorder prediction 277 291 - -
Lac7g1198 346 MobiDBLite consensus disorder prediction 276 303 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g1198 K03247 - csv:101211860 637.876