Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac7g1204 ATGGGGTTATTCTTGTTGGTGGATTTGATTCTTTTGTTCTTGAAGAAGATGTGTGGTTGGAGAGGTGGATTGTTTGTGGAATTGGTTGTTTTTGCAGATATGTGTTTGTTGGTGTCAGGTTTAGGTTCAATGTCTTCTGTTGCTGTTTCTTATGGTGAGAAAGGGCCTGTTTTCTGTGGTTTAAAGTCAGATGGGTCTCATCTTGTGAGCTGCTTTGGTTCAAACTCAGCCATAACTTATGGAACCCCTTCTCATTTCCCATTCATTGGTCTCACTGCTGGTGATGGGTTTGTTTGTGGGCTTCTTTTGGATTCCAATCAACCTTACTGTTGGGGAAGCAGTGGTTATGTTCAAATGGGTGTTCCTCAGCCCATGATCAAAGCAGCTCAATACCTGGAAATCAGTGCCGGTGATTACCATCTCTGTGGACTCCGAATGCCTCTGACTGGAAGGCGTAGGAACATGTCTTTTGTTGATTGTTGGGGTTACAACATGACGAGAACCTTTGCGTTTGATGGCCCGATTGAATCGATCTCGGCAGGGTCTGAGTTCAACTGTGGACTGTTTTCTCTTAATAGAACTGTTTTCTGTTGGGGTGATGAGACAAGCAGCCGGGTAATCAGTTTGATACCTAAAGATAAGAGGTTTCAAAAGATTGCATCTGGTGGATATCATGTTTGCGGGATTTTAGAGGGCGCAAAGGCGAGAGCATTCTGTTGGGGAAGGAGCTTAGGCATTGAAGAAGAGATCTCAGTTGCATATTCAGGTGAAGGAAATGTAGACTTGGTTCCAGTTGATCCATTAGACTCTGTTGTTGGGGGCAAGTTCCATGCTTGTGGAATCAAGAGCTTGGACCGTGGTGTGATTTGTTGGGGTTTTACGGTCAAACCGAGTACTCCAGCACCGGATGGGATTAAAGTTTATGACATTGCAGCTGGAGATTACTTCACATGTGGAGTTCTAGCTGAAAAATCTCTCCTGCCTGTTTGCTGGGGCCTTGGATTTCCTACTTCTCTACCTTTAGCTGTCTCGCCTGGAATATGTAAAGCAACTCCTTGCGCTCCTGGTTTCTACGAAATCAGCCAAGACAATGCTCGGTGTAAGTCGCCAAATTTTCATGTGTGTATGCCCTGCAGTACTGTTTGCCCTCCTGAGATGTACCAAAAATTCGAGTGCTCCTCAAAATCTGATAGGCAGTGTGAATATAACTGTTCAAGTTGCTTTTCTTCTGAATGCTTCTCAAACTGCTCAAATGGTATGACGGGGAAGAAAAATGAGAAGTTCTGGTCAATGCAGCTTCCAGTTCTTGTAGCTGAGATTGCTTTTGCTGTGTTTTTGGTAGCTATTGTGTCTTTAACTGCAATCTTATACGTTCGATACAAGTTACGGAACTGCCATTGCTCGGGGAAGGAGTTGAAGTCGAAGAAACACAAAGGAACTGCCTCTTCCTTCCAGAAGGAAAACTACAAAATACGTCCCGACTTAGATGAGCTGAAAATAAGGAGGGCTCAGATGTTCACCTATGAAGAACTCGAGAGAGCGACATGTGGGTTTAAGGAAGAGTCTATTGTGGGAAAGGGAAGTTTCTCTTGTGTTTTTCGAGGTGTTTTAAAGGACGGGACAGTCGTAGCAGTCAAACGGGCTATAATGTCTCCCAACATGCAGAAGAATTCAAAAGAGTTTCACACTGAACTTGACTTACTCTCAAGATTAAACCATGCCCATTTGCTTAATCTGCTAGGTTATTGTGAAGAAGGTGGAGAGAGGCTTCTCGTTTATGAGTTCATGGCTCATGGTTCCTTGCATCAGCACCTCCATGGCAAGAACAAGGCCTTAAAAGAGCAATTGGATTGGATAAGAAGGGTCACAATTGCAGTCCAAGCAGCCAGGGGAATCGAATACTTGCACGGCTATGCTTGTCCTCCTGTCATTCATCGAGACATCAAGTCGTCAAACATTCTCATCGACGAAGAGCATAATGCTCGAGTTGCCGATTTTGGCTTGTCATTGTTGGGACCAACCGATAGTAGCTCTCCATTAGCCGAGTTACCAGCCGGGACTCTTGGCTATCTTGATCCTGAATATTATAGACTTCATTACCTTACCACCAAATCTGATGTCTATAGCTTTGGTGTTTTGCTACTAGAAATTCTCAGTGGTAGAAAAGCCATTGATATGCAATATGAAGAAGGGAACATAGTAGAATGGGCAGTGCCTCTGATCAAATCCGGAGATATCTCTGCAATTTTAGATCCGATATTAAAACCGCCATCCGATATCGAGGCCTTGAAGAGGATTGCAAATGTAGCCTGTAAATGTGTGAGAATGAGGGCAAAGGAGAGGCCATCAATGGACAAAGTGACAACTGCATTGGAGCGTGCTCTTGCCCAATTAATGGGAAGCCCATGTAACGAACAACCAATCTTACCAACCGAGGTGGTTCTGGGAAGCAGTAGACTACACAAAAAGTCATCTCAAAGATCATCGAACCGTTCGGTCTCGGAAACAGACATAGCAGAAGCTGAAGATCAAAGGTTCGAGTTCAGAGCTCCGTCGTGGATCACATTCCCGAGCGTGACATCGTCCCAGAGGAGGAAATCCTCAGCATCAGAAGCAGATGTTGAAGGAAAGAATTTGGAAGGGGGGAGAAATGTAGGGAACTGTGGAGGTGTTGGGGATGGATTGAAAAGTTTAGAGGAAGAGATTGGGCCTGCTTCCCCTCAGGAAAAGTTGTTCTTAGAGCACAATTTCTAA 2754 44.52 MGLFLLVDLILLFLKKMCGWRGGLFVELVVFADMCLLVSGLGSMSSVAVSYGEKGPVFCGLKSDGSHLVSCFGSNSAITYGTPSHFPFIGLTAGDGFVCGLLLDSNQPYCWGSSGYVQMGVPQPMIKAAQYLEISAGDYHLCGLRMPLTGRRRNMSFVDCWGYNMTRTFAFDGPIESISAGSEFNCGLFSLNRTVFCWGDETSSRVISLIPKDKRFQKIASGGYHVCGILEGAKARAFCWGRSLGIEEEISVAYSGEGNVDLVPVDPLDSVVGGKFHACGIKSLDRGVICWGFTVKPSTPAPDGIKVYDIAAGDYFTCGVLAEKSLLPVCWGLGFPTSLPLAVSPGICKATPCAPGFYEISQDNARCKSPNFHVCMPCSTVCPPEMYQKFECSSKSDRQCEYNCSSCFSSECFSNCSNGMTGKKNEKFWSMQLPVLVAEIAFAVFLVAIVSLTAILYVRYKLRNCHCSGKELKSKKHKGTASSFQKENYKIRPDLDELKIRRAQMFTYEELERATCGFKEESIVGKGSFSCVFRGVLKDGTVVAVKRAIMSPNMQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEFMAHGSLHQHLHGKNKALKEQLDWIRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPTDSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVEWAVPLIKSGDISAILDPILKPPSDIEALKRIANVACKCVRMRAKERPSMDKVTTALERALAQLMGSPCNEQPILPTEVVLGSSRLHKKSSQRSSNRSVSETDIAEAEDQRFEFRAPSWITFPSVTSSQRRKSSASEADVEGKNLEGGRNVGNCGGVGDGLKSLEEEIGPASPQEKLFLEHNF 917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11150898 11153651 - Lag0021721.1 Lac7g1204 614105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac7g1204 917 Gene3D - 38 203 IPR009091 -
Lac7g1204 917 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 352 400 IPR001368 GO:0005515(InterPro)
Lac7g1204 917 CDD STKc_IRAK 524 793 - -
Lac7g1204 917 Pfam Protein tyrosine and serine/threonine kinase 521 790 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac7g1204 917 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac7g1204 917 SUPERFAMILY RCC1/BLIP-II 41 293 IPR009091 -
Lac7g1204 917 SUPERFAMILY Protein kinase-like (PK-like) 500 791 IPR011009 -
Lac7g1204 917 MobiDBLite consensus disorder prediction 819 835 - -
Lac7g1204 917 Gene3D Phosphorylase Kinase; domain 1 489 595 - -
Lac7g1204 917 FunFam Serine/threonine-protein kinase-like protein CR4 40 207 - -
Lac7g1204 917 ProSitePatterns Protein kinases ATP-binding region signature. 524 546 IPR017441 GO:0005524(InterPro)
Lac7g1204 917 Gene3D Transferase(Phosphotransferase) domain 1 596 803 - -
Lac7g1204 917 FunFam serine/threonine-protein kinase-like protein CCR1 488 595 - -
Lac7g1204 917 FunFam Receptor protein kinase CRINKLY4 596 798 - -
Lac7g1204 917 MobiDBLite consensus disorder prediction 859 917 - -
Lac7g1204 917 ProSiteProfiles Protein kinase domain profile. 518 795 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac7g1204 917 SMART serkin_6 518 795 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac7g1204 917 MobiDBLite consensus disorder prediction 819 838 - -
Lac7g1204 917 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 36 840 - -
Lac7g1204 917 Gene3D - 204 344 IPR009091 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g2460 Lac-Chr2:35879281 Lac7g1204 Lac-Chr7:11150898 3.10E-74 dispersed
Lac7g1204 Lac-Chr7:11150898 Lac7g2833 Lac-Chr7:47466282 6.60E-67 dispersed
Lac11g0489 Lac-Chr11:5069722 Lac7g1204 Lac-Chr7:11150898 1.10E-65 transposed
Lac13g0027 Lac-Chr13:230286 Lac7g1204 Lac-Chr7:11150898 1.70E-51 transposed
Lac1g2120 Lac-Chr1:42661570 Lac7g1204 Lac-Chr7:11150898 1.10E-80 transposed
Lac6g0982 Lac-Chr6:8867511 Lac7g1204 Lac-Chr7:11150898 1.90E-61 transposed
Lac3g2607 Lac-Chr3:39996838 Lac7g1204 Lac-Chr7:11150898 4.90E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86334 PF07714 PK_Tyr_Ser-Thr 5.90E-44 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac7g1204 - - - 0.0